Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun8g02815 | ATGGTTGTTAAAGTCATAGTAGAAAACAGAAAGGTAGATGAATTGGACAAAGCAATTTCTGTGGCCTCTAGAGATCCTTCTTTGTATGGCATTGACGAAGTGGAGCTTCAGAACCGGAGGAGGTGGACCAGTGATGCTCGTAGCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCAGGAACACGCTCAAATATAACAAACAATGCCAGTCTAAATGGGATGCGCAGGGAATTAATGAGGCTTACTAATTCTCATCAATCTGGGTCTGACCCATATTCTACCCAGGATAATGACGATTTCATAGAATCAGAATCGGATAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAACTTAGTATAAGTGTACAAAGAATTGGAGATGTTGGACTTACTATACATGAAGAGCTCGTGGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAGAAGGCTAGCGCAAAGGGCCAGATCATGATGATCCTGGGTTTGCTGGCTCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG | 606 | 0.4241 | MVVKVIVENRKVDELDKAISVASRDPSLYGIDEVELQNRRRWTSDARSQVSTAKKAVEAGTRSNITNNASLNGMRRELMRLTNSHQSGSDPYSTQDNDDFIESESDRQMLLIKRQDEELDELSISVQRIGDVGLTIHEELVAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun8g02815 | 201 | Gene3D | - | 7 | 60 | - | - | |
| Viun8g02815 | 201 | Pfam | Syntaxin 6, N-terminal | 11 | 54 | IPR015260 | GO:0016020|GO:0048193 | |
| Viun8g02815 | 201 | Pfam | SNARE domain | 146 | 197 | IPR000727 | - | |
| Viun8g02815 | 201 | Coils | Coil | 147 | 167 | - | - | |
| Viun8g02815 | 201 | SMART | tSNARE_6 | 104 | 171 | IPR000727 | - | |
| Viun8g02815 | 201 | SUPERFAMILY | t-snare proteins | 11 | 57 | IPR010989 | GO:0016020|GO:0016192 | |
| Viun8g02815 | 201 | Gene3D | - | 116 | 180 | - | - | |
| Viun8g02815 | 201 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 109 | 171 | IPR000727 | - | |
| Viun8g02815 | 201 | CDD | SNARE_Qc | 112 | 169 | - | - | |
| Viun8g02815 | 201 | SUPERFAMILY | SNARE fusion complex | 107 | 171 | - | - | |
| Viun8g02815 | 201 | PANTHER | SYNTAXIN | 10 | 193 | IPR045242 | - | |
| Viun8g02815 | 201 | FunFam | syntaxin-61 isoform X1 | 112 | 173 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun8g02815 | Viun-Chr8 | 36425996 | 36428487 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun8g02815 | 1 | 201 | SNARE and Associated Proteins | AT1G28490 | 65.842 | 5.50e-90 | 261 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun8g02815 | K08500 | - | gmx:100793612 | 270.396 |