Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02808 ATGAAAAGACCAAAATCGAAGGAGTTTCGGAAGCAACAGAGAGTCTCAGAGCAGGAAGAGATAGACCTGTTGAATTCATGGATCCAGTTCCAGCCACCGGACTCCGGCTCCAACCCAATGTCGCTTCCACCACTGACCAAAAGTTCCCCCGTTGGTCGCCTCCAAGACAACACCTACTCGCGCTATGCTGGCGCGTCCCGCTTCGAACAATTCCCGCTCTCCAAGAAAACAAAGGATGCCCTGAGGCAAGCCAAGTTCGTTGTCACAACCGACATCCAGAGAGCTGCTCTCCCCCACGCGCTCTGTGGCCGAGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCGCTTTTATTATCCCTGTGTTGGAGAAGTTGTATAGAGAGAGATGGGGACCTGAAGATGGCGTTGGCAGCATCATTATATCGCCTACAAGGGAATTGGCTGGTCAGATATTTGATGTGTTGAAGGATGTTGGAAAACACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGATGTTGAAATGGAGAAAGAACGTGTTAACGAGCTCAATATATTGATCTGCACACCTGGTAGACTGCTGCAACACATGGATGAAACTCCCAATTTTGATTGTTCTCAAATGCAGGTTTTGGTGCTAGACGAGGCTGATCGCATTCTAGACAGTGGGTTCAAAAAGGAACTAAATGCAATCATTTCTCAACTACCAAAGCGTAGACAGACCTTGCTTTTTTCTGCAACTCAAACGAAGTCAATTCAAGATCTTGCCAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCATGAAGAATCGGTGACAGCCACTCCTTCTCTCTTGAAGCAAATTGTGATGGTTGTTCCCCTTGAACAAAAGCTAGATATGCTGTGGAGTTTCATAAAATCTCATCTACAGTCAAAAATACTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATACTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTTGATTGTCCTGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACAGCTCGATATAAGTCTGATGGAAAGTCAGTTTTATTTCTGTTGCCATCGGAAATGCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTACTAAGCCAAGGCAAGAACGACTGCAACCAGTTTCTACTCTGTTGGCGTCTTTACTGGTTAAATATCCAGACCTGCAGCATCGGGCTCAGAGGGCGTTCATCACATATATGAGATCCATCCATCTACAAAAAGATAAAGACATATTTGATGTTATGAAACTGCCTGTTAACGAGTATTCGGCATCATTAGGTTTACCAATGACTCCAAAAATCCGTTTTCTTAACCAGAAAATTAAATCTAAAGTTGTGTCAACAAAATCAATTTTAGTTGAACCAGAAGATTCAAGCAAGAAAAATGTCTTGGAGGTTTCTAGAAACAAGATAGACACAGATCCTTTCAAGGATGAAGAAATCGAAAATGATCTTTTTCAGTTAGCAGATCCTGCAACAAATGAAGACAAAGTGAAGTCATCTGAAATTGAAGAAATAATACCAGGAACTCGTGTATTGAAGAAAAAGAAGCTCAAGATTAATGTACACAGGCCAGTGGGGACCAGGGTTGTTTTTGATGATGAAGGCAACACACTTCCTCCGCTAGCCAGGATAGCTGACACGCAAAGTGGCAAAGAAGCTTTGCTGCTTGACCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGCGATGATTTGAAGAAGGCTGACAAGGAAGACAAGATTATAGAGCGTCAGCGGCTTAGAGAAAAAAGAATAAAGCAGAAGATGAAATGGAAAGCTGGGAATGACGAAGAAGAGGAGGACCAAGATGATAATTCTGGGTCAGAAGGAGACGAAACTGTTAAAAGACGGCATAAAAAGAATAAAGTATACTTTGATAGTGACAGTGACGAGGGTGAAAGAAATGAAATCGCAGGGAATGCACGTACAAGTTCCGGCGCGGCTACTTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCTATGCACTCGTAG 2247 0.4299 MKRPKSKEFRKQQRVSEQEEIDLLNSWIQFQPPDSGSNPMSLPPLTKSSPVGRLQDNTYSRYAGASRFEQFPLSKKTKDALRQAKFVVTTDIQRAALPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKDVGKHHNFSAGLLIGGRKDVEMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPSLLKQIVMVVPLEQKLDMLWSFIKSHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSEMQMLEKLKAAKVPVHFTKPRQERLQPVSTLLASLLVKYPDLQHRAQRAFITYMRSIHLQKDKDIFDVMKLPVNEYSASLGLPMTPKIRFLNQKIKSKVVSTKSILVEPEDSSKKNVLEVSRNKIDTDPFKDEEIENDLFQLADPATNEDKVKSSEIEEIIPGTRVLKKKKLKINVHRPVGTRVVFDDEGNTLPPLARIADTQSGKEALLLDPEQKAEYYKRMRDDLKKADKEDKIIERQRLREKRIKQKMKWKAGNDEEEEDQDDNSGSEGDETVKRRHKKNKVYFDSDSDEGERNEIAGNARTSSGAATLEEQEALALKLLNSMHS 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02808 748 Coils Coil 640 660 - -
Viun8g02808 748 PANTHER RNA HELICASE 63 568 - -
Viun8g02808 748 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Viun8g02808 748 Gene3D - 51 278 IPR027417 -
Viun8g02808 748 MobiDBLite consensus disorder prediction 690 719 - -
Viun8g02808 748 SMART DUF4217_3 447 510 IPR025313 -
Viun8g02808 748 SMART helicmild6 325 408 IPR001650 -
Viun8g02808 748 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Viun8g02808 748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Viun8g02808 748 MobiDBLite consensus disorder prediction 668 732 - -
Viun8g02808 748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Viun8g02808 748 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Viun8g02808 748 CDD DEADc_DDX10 77 275 - -
Viun8g02808 748 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Viun8g02808 748 CDD SF2_C_DEAD 286 417 - -
Viun8g02808 748 SMART ultradead3 85 289 IPR014001 -
Viun8g02808 748 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Viun8g02808 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 427 IPR027417 -
Viun8g02808 748 Gene3D - 284 529 IPR027417 -
Viun8g02808 748 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02808 Viun-Chr8 36413762 36418659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02808 93 429 Eukaryotic Initiation Factors Gene Family AT3G19760 30.117 2.18e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02808 K14776 - gmx:100792106 1318.52