Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02789 ATGGCCATTACCAACACTTCTCTCACTGTCACAAACTGGTTTTCTGAAATGGTAGAAACAGTAGCTGCAAGTTTTAAGCATGGTTCTGCAGTTGGGCTATTCATGAAGGCTTTGGAGAGAGTTCTTTTTGCCTTATTTACTTGCATTCTGGCACTTGGAGGGTCAATAGTGGGAACAATTGCAGGAGGTATAAAAGGGCAGACCACAGAGACTGGTTTTCTTGATGGTGCTGGCAAAGGAGCAATCACAGGAGCAATTGCAGCACTGGAATTGATAAATTTTGACTATGTTGATGAGCCATTGTCCAAGTTTGCCCTGTTGAGAAGTTTATTCAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTGGCAAAACTCTATCAGCTGCATGTAACAATTAACACACTGGAAACAATTTACCAAGAAGTATCAGACATTTATGATATGAGGGGAGCAAGAGGGGTAAACCAGAATGTGATTATGAAGATTCCTTTTCAGCCATTCAACTCTGTAAAAATGTCCAAGTTATACAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTGAGGGTGCTTCCAAAATGTGGCCACCTTTTTCACCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGCCCAATGTGCAGAACTTATGTTCCAGACCACATTCTTCAATAA 705 0.4128 MAITNTSLTVTNWFSEMVETVAASFKHGSAVGLFMKALERVLFALFTCILALGGSIVGTIAGGIKGQTTETGFLDGAGKGAITGAIAALELINFDYVDEPLSKFALLRSLFNGKVFMEWICPAVAKLYQLHVTINTLETIYQEVSDIYDMRGARGVNQNVIMKIPFQPFNSVKMSKLYNMSCCSICFQDFEDGELVRVLPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHILQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02789 234 SMART ring_2 183 224 IPR001841 -
Viun8g02789 234 ProSiteProfiles Zinc finger RING-type profile. 183 225 IPR001841 -
Viun8g02789 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 32 226 IPR044523 -
Viun8g02789 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 231 IPR013083 -
Viun8g02789 234 Pfam Ring finger domain 183 225 IPR001841 -
Viun8g02789 234 CDD RING-H2_EL5-like 182 225 - -
Viun8g02789 234 SUPERFAMILY RING/U-box 182 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02789 Viun-Chr8 36362998 36364921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02789 38 228 C3H Transcription Factor Family AT5G66070 35.821 1.34e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02789 - K19041 gmx:100305612 373.629