Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02788 ATGGGTTGTTGTCTGAGTAAAAAAGGGTCAGAGCCAGAAGAGCACATTGGTTACAGAAATGCTGTTGGGGGAGCCCACAATCACAAGAGCCATGAACCCTTTGTGAACCAATTACCCGAGAAACATGCTCCTCACGCTGTTTGGAGGCACACTGTTCCTTCTCCAGGCCCAAAACATGTTCACAAGGCTGACACAATCACAGGGAAGCCATTTGAGGATGTTAAGCAGCACTATACTCTTGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATCTCTGCACTGAGAATTCAACTGGTTTGCAATATGCCTGCAAGTCCATTTCAAAGAGGAAGCTTGTGAGAAGAGATGACAAGGAGGATATGAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAATCCAACATTGTGGAGTTCAAAGGTTCTTATGAGGACAAGAACTCTGTTCATGTGGTCATGGAGCTGTGTGCTGGTGGTGAACTTTTTGATAGGATCATTGCCAAGGGGCACTACAGTGAAAGAGCTGCTGCTTCGTTGTGTAGACAGATTGTTAAGGTTGTTAACATCTGCCATTTTATGGGAGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCCAGTAAGGATGATAAGGGACTTCTCAAGGCCACAGATTTTGGTTTATCGGTTTTCATAGAAGAAGGAAAAGTGTATCGGGACATAGTTGGCAGTGCTTACTATGTTGCTCCAGAAGTTCTTAATCGTAGCTATGGGAAGGAAGCAGATATATGGAGTGCAGGAGTAATGCTGTATATCTTACTTAGTGGTGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATTCCATATTGAAGGGTCATATTGACTTTGAAAGCAATCCATGGCCAAACATATCAAGCAGTGCTAAGGACCTTGTTCGCAAAATGCTTACAAAGGATCCAAAGAAACGCATTACTTCAGCTCAGGTTCTAGAACACCCGTGGCTTAGAGAAGGTGGCAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCAATGAACAAACTAAAAAAACTAGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTCTGAAGGCAATGTTCACAAATATGGACACTGACAACAGTGGTACAATCACCTATGAGGAACTGAGAGCAGGATTGCAAAGACTTGGCTCAAAGCTAACTGAAGCTGAAGTGAGACAACTTATGGATGCCGCTGATGTAGACGGAAATGGAACAATTGATTACATAGAATTCATCACTGCAACAATGCACAGATACAGGTTGGAGAGAGATGAGCATCTTTATGGGGCCTTCCAATATTTTGATAAAGACGGGAGTGGGTATATCACAAGAGATGAACTGGAAACAGCCATGAAGGAGAATGGTATGGGAGATGAGGCCACAATCAGGGAAATTATATCTGAAGTTGACACTGATAATGATGGTAGAATCAACTATGACGAATTTTGTACAATGATGAGGAGTGGAACCCAGAAAGGAAAGCTATTCTAA 1578 0.4284 MGCCLSKKGSEPEEHIGYRNAVGGAHNHKSHEPFVNQLPEKHAPHAVWRHTVPSPGPKHVHKADTITGKPFEDVKQHYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVRRDDKEDMKREIQIMQHLSGQSNIVEFKGSYEDKNSVHVVMELCAGGELFDRIIAKGHYSERAAASLCRQIVKVVNICHFMGVMHRDLKPENFLLSSKDDKGLLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLNRSYGKEADIWSAGVMLYILLSGVPPFWAETEKGIFDSILKGHIDFESNPWPNISSSAKDLVRKMLTKDPKKRITSAQVLEHPWLREGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDNSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRYRLERDEHLYGAFQYFDKDGSGYITRDELETAMKENGMGDEATIREIISEVDTDNDGRINYDEFCTMMRSGTQKGKLF 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02788 525 SUPERFAMILY EF-hand 375 515 IPR011992 -
Viun8g02788 525 FunFam calcium-dependent protein kinase 1 164 343 - -
Viun8g02788 525 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Viun8g02788 525 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
Viun8g02788 525 CDD STKc_CAMK 77 335 - -
Viun8g02788 525 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02788 525 Gene3D - 344 520 - -
Viun8g02788 525 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02788 525 Gene3D Transferase(Phosphotransferase) domain 1 164 343 - -
Viun8g02788 525 Pfam Protein kinase domain 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02788 525 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Viun8g02788 525 SUPERFAMILY Protein kinase-like (PK-like) 76 343 IPR011009 -
Viun8g02788 525 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Viun8g02788 525 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Viun8g02788 525 FunFam Calcium-dependent protein kinase 1 80 163 - -
Viun8g02788 525 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Viun8g02788 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Viun8g02788 525 FunFam Calcium-dependent protein kinase 1 344 519 - -
Viun8g02788 525 SMART efh_1 383 411 IPR002048 GO:0005509
Viun8g02788 525 SMART efh_1 419 447 IPR002048 GO:0005509
Viun8g02788 525 SMART efh_1 455 483 IPR002048 GO:0005509
Viun8g02788 525 SMART efh_1 490 518 IPR002048 GO:0005509
Viun8g02788 525 ProSiteProfiles EF-hand calcium-binding domain profile. 487 521 IPR002048 GO:0005509
Viun8g02788 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 511 - -
Viun8g02788 525 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Viun8g02788 525 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Viun8g02788 525 Pfam EF-hand domain pair 384 444 IPR002048 GO:0005509
Viun8g02788 525 Pfam EF-hand domain pair 454 516 IPR002048 GO:0005509
Viun8g02788 525 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Viun8g02788 525 Coils Coil 401 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02788 Viun-Chr8 36346552 36354455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02788 35 525 EF-hand Containing Proteins AT3G20410 76.023 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun8g02788 Pkinase 7.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02788 K13412 - gmx:100794852 947.577