Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02700 ATGGGGTGTGTCGGTTTCAGGTACGATGTGTTCATTAGTTTCAGAGGCGCAGATACCAGAAGCAATTTTGTAGGGCATCTCCGAAAAGAGTTGGGTAGGAAGGGAATTAAGAGTTTCAATGATGACAGGGATATGGCGATAGGGGAAAGTCTTTCACCTGCTCTGAAAAAGGCCATTGAAGAATCTAGGGTTTTCATTGTTGTGTTTTCTGAGAACTATGCATCTTCCACATGGTGTCTGGATGAACTTGTTAGGATCATGGAACTGAAGGAGAAGAAGCAGAAGCAAGTTGTTTTGCCAGTGTTCTACCATGTAGATCCATCAGATATAGTGCAAGAGAGAAATAGCTTCGGAAAACACATGACGAAACACGAAAATAGGTTTGGAAAAGAGGAAATGAAGGCTTGGAGGTCTGCTTTGTCTCAAGTACTTAATTTGCCATCGAAGCATATCACCACCGGGTGTGAAAACAGTTTTATTGAAGAAATTGTTGGGGAGGTCTATAAGAATATAGCTCCTAAACCTTTATATACCGGTCAGAACCCTGTCGGACTTGAGCCCCACATCGAAGAGGTTATGTCACTTTTGGACATGAATCCTGATGACAACACTGTAAGAATGTTGGGCATATATGGACTCGGTGGAATTGGAAAGACGGAACTTGCCAAAGCTTTGTATGACAACATTGTACAACACTTTGATGCTGCAAGTTTTCTTGCCGGTGTCAGAGAAAAATCAAACACAATCAATGGCATGGAAGATCTACAGAAGACACTTTTATCTGAGATGTTAGAGGAGTCAGAAACTAAGTTGGGAAGTAGCAGTAAAGGAATATATCAAATAAAACAAAAGCTTCGCCGAAAGAAAGTTCTTTTGGTTCTTGACGACGTTGATGATAAAAAGGAGTTAGAAAAGCTGGCAGGAGGGTGTGATTGGTTTGGTCCTGGTAGTAGGATCGTTATAACGACAAGGGAAAAGGATGTGCTAATTGCTCACCATGTTGAAAATATTTATGAAATGAAAGAACTCGATGAACAACATTCTTTGAAGCTCTTTTGTTGGAATGCATTCGGACAAGGATATCCTAAACCAGGTTTTCAAGATGTGTCTGTGAGAGCTGTAGATTACGCCAAAGGTCTTCCACTGGCTTTAAAAGTGATCGGCTCTGATTTAGCTACTCTTTATGGAGCAAGTTTAGAAGCTTGGGAAGATGCATTGGAAGAATATGAGAAGACTCCTCCAAATAAAAAGATTCAAGATGTGCTTAAAATAAGCTACGATAGATTGGATAACGATGCCAAACAAGTTTTCTTGGACATAGCTTGCTTCTTTAAAGGGGAGAGAGTGGAATACGTGAACAAGATACTTGAGGAATTTCGTTCAGCTCACAAAATGAAAGAGCTTGTTAATAAATCTCTCATAACTATCGAGAATGGATGCCTGAAGATGCATGATCTAATACAAGATATGGGTAGAGAGATTGTTAGGCAGGAAGCACCAAATAATCCTGGTGAACGTAGCAGAATATGGGATTATGAAGATGTTCTTGAAATACTGAACGAAGATTATGGAAGTGAAAAGATTCAAGGGATTATGCTTGATCCCCCTCAGGAAGAAAAGGTAAATTGGAGTGGTACTGAGTTTGAGAAGATGAAATGGCTCAGAATTCTCATCGTTCGAAACACATCCTTTTCATCTGAACTTCAACATTTACCGAATCATTTGAAACTGCTTGACTGGGAGAACTATCCTTCAAAGTCTTTCCCACCAAAATTTCATCCAAAGAAAATCGTTGTTTTCAATTTGCCTAGAAGTTGTCTAACATTCCAAGACCCATTCAAGAAATTTCCATGCTTGACCAATATGGACTTTTCGTATAACCAATGTATCACTGAAATACCTGATGTGTCCGAACTTCAGAATCTAAGAGAAATGAGACTTGATCATTGTAGAAACCTAATTGCAGTCCATGAATCTGTTGGAGTTCTGAAAAGGCTTGCGCACTTAAATCTTTCAGAATGCAGAAAACTTCAAAATTTTATGTCCAGAATGTTTCTACCATCTCTAGAGATCTTTAACCTTAACTTTTGTGAAAGCCTTGGTCACTTTCCAGAGATAATGAAAGAAATGACTAAGCCATTGAAGATTTATATGACAAATACGGGTATTCAAGAGCTTCCAGAATCCGTTAGTAAACTTACCGGGCTTGTTTCCTTAGACATATCGAATAACAGGGAACTTAAATATCTACCAAGCAGCTTATTCATGTTGCCAAATGTTGATTCATTCATAATCAAAGCATGTTCCAAACTTGGAGAATCCTTCAGAAGTTTGGTGCAACACCCATCAAAAGCTAATGTTCATCCAAAATTACGAATACTGAATCTGGAAAATGGTAACTTGTCTGATGAAGATCTTCTAGCAATTCTTTGCCATTTTCGAAAATTAGAAGAATTGATTGTTTCAGAGAACAATTTTGTATGTATCCCTTCATGCATCAAGGAATGTGGTGACTTGACAAGTCTCGATTTGAATGGATGTAAAAAGCTTAAGAAAATTCCTGAACTCACTGGCTTGAGAATTCTAGATGTTCATGATTGTATATACCTTGAAGAAATTTCAGAGTTGCCGTCTACTGTTCAGAAAGTAGACGCAAGATTTTGTTTCAACTTAACAAGAGAAACATCAGACATGCTATGGTCTCAGGTGAAGAAAGCTGAAGGAGGAATAGAAATGGTGATGCCGTTTATAAGTGAGATTCCAGAATGGTTTAACTATGTGGGAGTGGAAAGGATTCCTCGTTTCTGGGTTCGAGGCAAGTTCCCTAACATTGTGGTAGCCATGATCTTCCACTTCAAAAACGAGAGAGAAAGGTACATATTTGGTGGGCGTGGGCTTGTTGATCTGCGTTTACTGATCAACGGTCGATATGCTCCTCGAAAAGGGTACCAGAACTTTCAGATTGAGGAGGAACACATCTTGGTGTGTGACGTAGGAGCTTTGTGCAGTGAGAAGGAGTGGGTTGGCGATGCGGTGATGGAGCATGAGTGGAATCTGGTGCAGGTTGCGTATGATGCGACTTCGTCGTTGATGATAAGTGGTTGGGGAGCGTTTGTGTATGAAGAAAAAGAAGGAAGAAGCATGGAAGATATCCTATTCGCTTGTCCCAATAACCTGATTGTGAACGGAGATTCAACCTGTGTGGTTAAGGGAAGTGTGGAGGAGGACGAAAACTACGTTCCTGTTCCGGAAGGAGTAGCGTGGGAGTTGTTGTTTGAAGGAATAAAGGATGGAATTGTTGAGGCATGGAAGATGTTTCCTTCTCTGGATATTGCTGAAGTCTTTGGCGCTGTGATGAAGAAGAATGGTAGGATTGAATGGACAGCTGAAGGAATGGAGGGAATACCCTCAGCTGAAAATAGGACTTATTTTACTGGACTTTACGGTGCACTCTTGGAAGCAAATCGGAGATTTCCTGATTTGGACGTGGGGGCAACACTGAGTACTGTAGCAAATAGGAAAGGGATTAAAGGAGATTTTAAAACACCCTTACAAGAAAAAATGAGGATTCCTCATTTGGATTGGACTACAGTGACACTTCCTCCCTCTCACGACCCTCTCATGCAAATATACATGATGATGATGAAGCAGCAGAGTTCTTCGGAATCCGAGCTCAAAACTAAAACCCTGTGGAAGTTGAAGGAGAGCCACCAAGTTCTGCGCAACGGACTTGCACTACGTGAAAATGCTGCTCAGAACGCACCCAGCTGTTCCAAAAATCGATATGATGAACTGATTCAGAAATTCCACATCCAATATGATGCGTTTGTTGGGAAGAGGGTAGACAGGGTTTATGGTGTGGCAAAGTACGAGAAGGATAGTGTTGTTTTGAAAGAAAGAGTGAGAGAAATAGAGAGGGTATTCAATGGTGTGGTTGAGAGGCTCCAGAATTCAGAGGAGTTTGAAGATGTAATGACTGCAATGTTCTTGAATGGACTCAGGGATGGAGTCCTTGAAGCACGGGCCATCTTACTTGCTCTCTGCACCCACACACAAGCTCATGAACGTGTCACTGATGAGGCTACTAATAATCAAAACATTTCCTAG 4107 0.4064 MGCVGFRYDVFISFRGADTRSNFVGHLRKELGRKGIKSFNDDRDMAIGESLSPALKKAIEESRVFIVVFSENYASSTWCLDELVRIMELKEKKQKQVVLPVFYHVDPSDIVQERNSFGKHMTKHENRFGKEEMKAWRSALSQVLNLPSKHITTGCENSFIEEIVGEVYKNIAPKPLYTGQNPVGLEPHIEEVMSLLDMNPDDNTVRMLGIYGLGGIGKTELAKALYDNIVQHFDAASFLAGVREKSNTINGMEDLQKTLLSEMLEESETKLGSSSKGIYQIKQKLRRKKVLLVLDDVDDKKELEKLAGGCDWFGPGSRIVITTREKDVLIAHHVENIYEMKELDEQHSLKLFCWNAFGQGYPKPGFQDVSVRAVDYAKGLPLALKVIGSDLATLYGASLEAWEDALEEYEKTPPNKKIQDVLKISYDRLDNDAKQVFLDIACFFKGERVEYVNKILEEFRSAHKMKELVNKSLITIENGCLKMHDLIQDMGREIVRQEAPNNPGERSRIWDYEDVLEILNEDYGSEKIQGIMLDPPQEEKVNWSGTEFEKMKWLRILIVRNTSFSSELQHLPNHLKLLDWENYPSKSFPPKFHPKKIVVFNLPRSCLTFQDPFKKFPCLTNMDFSYNQCITEIPDVSELQNLREMRLDHCRNLIAVHESVGVLKRLAHLNLSECRKLQNFMSRMFLPSLEIFNLNFCESLGHFPEIMKEMTKPLKIYMTNTGIQELPESVSKLTGLVSLDISNNRELKYLPSSLFMLPNVDSFIIKACSKLGESFRSLVQHPSKANVHPKLRILNLENGNLSDEDLLAILCHFRKLEELIVSENNFVCIPSCIKECGDLTSLDLNGCKKLKKIPELTGLRILDVHDCIYLEEISELPSTVQKVDARFCFNLTRETSDMLWSQVKKAEGGIEMVMPFISEIPEWFNYVGVERIPRFWVRGKFPNIVVAMIFHFKNERERYIFGGRGLVDLRLLINGRYAPRKGYQNFQIEEEHILVCDVGALCSEKEWVGDAVMEHEWNLVQVAYDATSSLMISGWGAFVYEEKEGRSMEDILFACPNNLIVNGDSTCVVKGSVEEDENYVPVPEGVAWELLFEGIKDGIVEAWKMFPSLDIAEVFGAVMKKNGRIEWTAEGMEGIPSAENRTYFTGLYGALLEANRRFPDLDVGATLSTVANRKGIKGDFKTPLQEKMRIPHLDWTTVTLPPSHDPLMQIYMMMMKQQSSSESELKTKTLWKLKESHQVLRNGLALRENAAQNAPSCSKNRYDELIQKFHIQYDAFVGKRVDRVYGVAKYEKDSVVLKERVREIERVFNGVVERLQNSEEFEDVMTAMFLNGLRDGVLEARAILLALCTHTQAHERVTDEATNNQNIS 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02700 1368 SMART till_3 7 146 IPR000157 GO:0007165
Viun8g02700 1368 Pfam TIR domain 8 170 IPR000157 GO:0007165
Viun8g02700 1368 PRINTS Disease resistance protein signature 377 391 - -
Viun8g02700 1368 PRINTS Disease resistance protein signature 284 298 - -
Viun8g02700 1368 PRINTS Disease resistance protein signature 661 677 - -
Viun8g02700 1368 PRINTS Disease resistance protein signature 207 222 - -
Viun8g02700 1368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 440 IPR027417 -
Viun8g02700 1368 Gene3D - 342 430 IPR042197 -
Viun8g02700 1368 SUPERFAMILY L domain-like 482 875 - -
Viun8g02700 1368 ProSiteProfiles TIR domain profile. 6 171 IPR000157 GO:0007165
Viun8g02700 1368 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 173 - -
Viun8g02700 1368 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 146 IPR035897 -
Viun8g02700 1368 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 753 IPR044974 GO:0006952
Viun8g02700 1368 Gene3D - 173 337 IPR027417 -
Viun8g02700 1368 Gene3D - 6 172 IPR035897 -
Viun8g02700 1368 Gene3D Ribonuclease Inhibitor 539 715 IPR032675 -
Viun8g02700 1368 Gene3D Ribonuclease Inhibitor 716 905 IPR032675 -
Viun8g02700 1368 Pfam NB-ARC domain 186 426 IPR002182 GO:0043531
Viun8g02700 1368 Coils Coil 1287 1307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02700 Viun-Chr8 35823276 35829546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02700 8 820 WRKY Transcription Factor Family AT4G12020 31.377 7.66e-106 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02700 - - var:108338187 1916.74