Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02684 ATGAACAACACTATTCCAGGTTGGGATTTTGAGAGTGATACATGTTTCACCAACCAGAGAAAACCCACAGGGCTGGACCATGAACTTGTAGAACTCCTATGGCAAAATGGCCAAGTAGTTATGCACAGCCAAGCAAATAGGAAGCTACCAGGGAATTCATCTAACTTGAGACAGATGCAGAAAACTACTTTAAGAACCAGTGAGCCGAACTTGGATCAAGAAGAGGCAGCTCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGGACTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACAAGCCAATCAGGGAACTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTTCACCTTCACAAGAGAATCTTATGTCTGCTCCAGGATTACATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACCCCGCAATGTTTCTTCACCATCTCAAAAAACTGCGGTTAACCTCTCACAAAGTGTAGCTAGAGAACACTCGGTGATCACGGTTGGTTCAAGTCACTGTAGCAGCAACCACATCCCTCAGGACCAAGGTGTAAACAGGGTTTCAAGCAGTGGTGTTTGGGCCACCACCACTAATAACACTACTTTATCTGCTGAGCCTGATGCTGTAGATTGTATCCAGAGACCAGCTCCTAGAAATGAGAGAGGAAAATCAGAGATGATTGAACCAACTGTGACTTCATCTTCCGGTGGCTGTGGCAATACTGGTATTGGAAGAACTTGTTCTTTATCAACAAGAGAACATGGCCGAAAGAGAAAAGGGACAGAAGAAGAAGCACTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGATATCATCTCAGCGTTCCAGAAGAAACCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATTAACGACAAGATGAAAGCATTGCAGCAACTGATACCAAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGGGCTGGAATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGTCACAGATGCAATTACCAAAAGTGGGTGAAGCCATGTCTCTGACTCAACCTCAGATGCCAAACCAGAATCATTTACTGTGCCAAAATCCACTTCTGGGTGCCTTCAATTACCAAAATCTGATGCAAAAGCCATGCCTTTCAGAACAATATGCACGTTACATGGGCTACCATCTCATGCACAGTGCCTCTCAGCCAATGAACGCGTTGAGACATGGTTCTGAAGCAATGCAACACAGTGAAACAATGATTGCAGGAAGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTCGATGATGCTGTTAGTGGCAAAACTGGTTCTTCCACCTTTAACTGA 1518 0.4354 MNNTIPGWDFESDTCFTNQRKPTGLDHELVELLWQNGQVVMHSQANRKLPGNSSNLRQMQKTTLRTSEPNLDQEEAAPWIQYPLDDPLEQGLCSNLLSELPPPCEVESYYKPIRELEEEKFANIFSPSPSQENLMSAPGLHVPDSSQKINDFGASRKVLNFPHFSAPRNVSSPSQKTAVNLSQSVAREHSVITVGSSHCSSNHIPQDQGVNRVSSSGVWATTTNNTTLSAEPDAVDCIQRPAPRNERGKSEMIEPTVTSSSGGCGNTGIGRTCSLSTREHGRKRKGTEEEALEEQSEATELKSADGNKISSQRSRRNRAAEVHNLSERRRRDRINDKMKALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHYMSQMQLPKVGEAMSLTQPQMPNQNHLLCQNPLLGAFNYQNLMQKPCLSEQYARYMGYHLMHSASQPMNALRHGSEAMQHSETMIAGSNNSSGPMSGTANVDDAVSGKTGSSTFN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02684 505 Gene3D - 313 374 IPR036638 GO:0046983
Viun8g02684 505 PANTHER TRANSCRIPTION FACTOR PIF3 19 485 IPR044273 GO:0003700|GO:0006355
Viun8g02684 505 MobiDBLite consensus disorder prediction 276 301 - -
Viun8g02684 505 SMART finulus 324 373 IPR011598 GO:0046983
Viun8g02684 505 MobiDBLite consensus disorder prediction 309 326 - -
Viun8g02684 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 367 IPR011598 GO:0046983
Viun8g02684 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 380 IPR036638 GO:0046983
Viun8g02684 505 CDD bHLH_AtPIF_like 318 381 IPR047265 -
Viun8g02684 505 Pfam Helix-loop-helix DNA-binding domain 322 368 IPR011598 GO:0046983
Viun8g02684 505 FunFam Basic helix-loop-helix transcription factor 313 376 - -
Viun8g02684 505 MobiDBLite consensus disorder prediction 475 505 - -
Viun8g02684 505 MobiDBLite consensus disorder prediction 240 326 - -
Viun8g02684 505 MobiDBLite consensus disorder prediction 252 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02684 Viun-Chr8 35722042 35727018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02684 7 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.504 3.08e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g02684 HLH 7.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02684 K16189 - gmx:100811777 718.383