Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02676 ATGAAGCTTTCTTCTTCTGGATTTAATCAACCGGGGGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAGCTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAATAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCGCAACTTATCTGTCAGCTTCACAATGTAACGATGCATGCGGATGCTGAAACAGATGAAGTATATGCACAAATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTTATGCCTGCTGAATTGGGCACTCCTAGCAAGCAACCAACCAACTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAGTTTAGACACATATTTCGAGGTCAGCCCAAACGACATCTTCTTACTACTGGTTGGAGTGTCTTTGTCAGTGCCAAGAGACTTGTTGCGGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGAGCGAATCGTCCACAGACTATCATGCCGTCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCACGCAGCTGCTACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAGTTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTATATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTGTTTGAGACGGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCTGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACCGCAGGGGAGAGGCAACCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACTACATTCCCCATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGTCCTTGGCCAACGGGCCTACCTTCTTTGTATGGTCTCAAAGATGGAGACATGGGCATTGGTTCTCCGTTCATGTGGCTCCAAGGTGGACTTGGGGATCAAGGAATGCAATCTTTAAATTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAAACTGGACTCTTCTATGCCAGGTCTCCAACCAGAGTTATACCAAGCAATGGCTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTTCAGCAGACTGCAAATGTTCCCAGTGCTCATACCTCTGAGGTACAGAGGCAAGTATTACCACAGTCTCAGCCTCAAAGCACCCTTCTACAGAATTTTCAAGAAAACCAAGTGCCTGCTCAGTCACAACTTCTGCAACAGCAGTTGCATCGCTACCATCCATATGGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAATTTGCCTGTTCAGCAGCAGTTACCAAATGTCATATCTCCCTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTACGCATTGCCAGCAGCAGAGTTTTCTTGAACCTATCAGGAATCATATATCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTTGGAACGTTCTCCCAGGATGGAGCATCCCAGTTACTTAACTTGAGTGGATCCAATTCCGTTATATCTTCATCCATCCTACCCAAGCAAATGACAGTTGAACCTCAGCTTCCCTCTGCTGCTGCTCAGTGCGTGTTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAATGTGTCTGAGCTTGCTGCTTTGCCTCCCTTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTATTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATGGGCAATGTGAATGATGCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTACCACAGGCACTGATTTTCCCTTAAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGACGAGCTGCGTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGGGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATCCTATCTCCACTAGAAGTGCAGCAAATGGGCAAAGGTGGTAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCTACCTCTGGCAACTCTTGTGATAATTATGCAAGTCAACAGGAGTTGAGAAGTTCCAGAAATGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2685 0.4555 MKLSSSGFNQPGEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLMPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPKLDSSMPGLQPELYQAMASSAFQEMRTMDPSKSSQSLLQFQQTANVPSAHTSEVQRQVLPQSQPQSTLLQNFQENQVPAQSQLLQQQLHRYHPYGDQRQQQQQLKNLPVQQQLPNVISPLSNFASGTQSQSPPMQALATHCQQQSFLEPIRNHISGSDVSPIQSLLGTFSQDGASQLLNLSGSNSVISSSILPKQMTVEPQLPSAAAQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNMGNVNDALSLPFSASNCGGTTGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLGDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGGSPSTSAPGHKLSTSGNSCDNYASQQELRSSRNGMASMGSFHY 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02676 894 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Viun8g02676 894 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Viun8g02676 894 Gene3D - 754 849 - -
Viun8g02676 894 FunFam Auxin response factor 127 231 - -
Viun8g02676 894 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 850 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun8g02676 894 SMART B3_2 129 231 IPR003340 GO:0003677
Viun8g02676 894 MobiDBLite consensus disorder prediction 848 881 - -
Viun8g02676 894 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun8g02676 894 SUPERFAMILY CAD & PB1 domains 751 834 - -
Viun8g02676 894 CDD B3_DNA 128 229 IPR003340 GO:0003677
Viun8g02676 894 Pfam AUX/IAA family 747 842 IPR033389 -
Viun8g02676 894 MobiDBLite consensus disorder prediction 453 472 - -
Viun8g02676 894 FunFam Auxin response factor 293 365 - -
Viun8g02676 894 Gene3D - 127 230 IPR015300 -
Viun8g02676 894 Gene3D - 293 365 - -
Viun8g02676 894 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Viun8g02676 894 FunFam Auxin response factor 753 849 - -
Viun8g02676 894 ProSiteProfiles PB1 domain profile. 758 844 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02676 Viun-Chr8 35674285 35682592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02676 98 855 B3 DNA Binding Superfamily AT5G37020 55.163 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun8g02676 AUX_IAA 1.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02676 - - gmx:100810798 1645.56