Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02661 ATGTTAACCGCAATCCTCAGAAGAACTTGTTCCACCCTCTCAAGGCGCGCTTTCCCCGCCGTCGTAATCTCCGCCAGCAACGACTTCCGGCCACTCTCCGCTGCCTTCATTCCCAGAAACTTTCACTCCAAACCGGTTCCTTTGAATTTCCGTTATTCTTTATATCACCGCGCTGAATATGCTGTTGACGAATTCCCTTATGAAGAAGGGTCTAAAGGGAACGCCGACGAGGGACTCGAGATCGCGAAGCTCGGAATCTCTCAGGATATTGTCTCAGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCCGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGGACTGGAACTGGGAAGACTCTTGCATTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCGAAGCATGGGCGGGGAAGGGATCCTTTGGCTTTAGTTCTGGCTCCAACTAGGGAGCTTGCTAAGCAGGTTGAGAAGGAATTCTATGAGTCGGCACCTAACTTGGATACTATTTGTGTTTATGGGGGTACGCCAATCTCTAAGCAGATGAGGCAGCTCGATTATGGGGTTGATATTGCTGTGGGAACACCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATCTGAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTCCAGGAGGAAGTGGAGAAGATCTTGGAAAGGTTGCCCCCCAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCACGCAATTACCTGAATGATCCCCTGACCATTGATCTGGTTGGAGATTCTGATCAGAAGTTAGCAGATGGAATTTCACTGTACTCCATTGCATCTGACTTATATGTTAAAGCGGGAATTCTTGCACAGCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCAGACCGATTATCGTATACCATGGCAAAAAGTGTTCAGTGTGAGGCTTTGCACGGAGACATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAATGGGCATTTTAACGTTTTGGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCGGAGATATTTGTTCATAGATCTGGGCGGACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTGAGGCTTATTGAGCGTGATGTGGGCTGTAGATTTACAGAGCTACCAAGGATTGCTGTGGATAGTGCATCCATGGACACGGTTGGCATGGGCAGTGGGCGGTTTGGTTCTTTTGGAAGTACAAGGGATCGTCGTTATGGTGATACAGGTTTTAGCCGTGGTCCTGGATCTGGCCGTTCTGGCGGCTACAATAACAGTGGATTTGGCCGCTCTAGCTTTGGGGATTCTGGTGAAAGGTTTGGTGGACAAAGTTATAATCGTTTTGGTGGGTCTGGTTTCAGTCAATCAGGAGGGGGGTTTTCTGGAAATTCATCTGGTGAAATGAGTAGATATGGTGGACCAAGCACTGGTAGGTTTGGCTCATCTGGTGGCTTTGGCTCAGGTCAATCAGAAAGTAGATCTGGTCGATCATCTGGTGGGTCTAGGTTTAGTCGTCCAGATGATTTTGGGGGATTTGGTGGTTCAGATCGTTCGGGTCAATCTAGTGGCTTTGGTGATTCTCGTGGTAGTAATCAGAACAATAGAAGACCTTTTTAA 1839 0.4644 MLTAILRRTCSTLSRRAFPAVVISASNDFRPLSAAFIPRNFHSKPVPLNFRYSLYHRAEYAVDEFPYEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYESAPNLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVVLDEADQMLQVGFQEEVEKILERLPPKRQTLMFSATMPSWIKQISRNYLNDPLTIDLVGDSDQKLADGISLYSIASDLYVKAGILAQLITEHAKGGKCIVFTQTKRDADRLSYTMAKSVQCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGCRFTELPRIAVDSASMDTVGMGSGRFGSFGSTRDRRYGDTGFSRGPGSGRSGGYNNSGFGRSSFGDSGERFGGQSYNRFGGSGFSQSGGGFSGNSSGEMSRYGGPSTGRFGSSGGFGSGQSESRSGRSSGGSRFSRPDDFGGFGGSDRSGQSSGFGDSRGSNQNNRRPF 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02661 612 MobiDBLite consensus disorder prediction 492 506 - -
Viun8g02661 612 MobiDBLite consensus disorder prediction 521 545 - -
Viun8g02661 612 FunFam ATP-dependent RNA helicase RhlE 71 287 - -
Viun8g02661 612 CDD SF2_C_DEAD 310 427 - -
Viun8g02661 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Viun8g02661 612 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 53 455 - -
Viun8g02661 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 457 IPR001650 -
Viun8g02661 612 Pfam Helicase conserved C-terminal domain 312 418 IPR001650 -
Viun8g02661 612 Gene3D - 300 461 IPR027417 -
Viun8g02661 612 SMART ultradead3 98 301 IPR014001 -
Viun8g02661 612 MobiDBLite consensus disorder prediction 589 612 - -
Viun8g02661 612 Gene3D - 80 288 IPR027417 -
Viun8g02661 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 284 IPR014001 -
Viun8g02661 612 MobiDBLite consensus disorder prediction 554 575 - -
Viun8g02661 612 MobiDBLite consensus disorder prediction 465 612 - -
Viun8g02661 612 CDD DEADc 90 285 - -
Viun8g02661 612 Pfam DEAD/DEAH box helicase 103 272 IPR011545 GO:0003676|GO:0005524
Viun8g02661 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 439 IPR027417 -
Viun8g02661 612 SMART helicmild6 338 418 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02661 Viun-Chr8 35579178 35583462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02661 84 455 Eukaryotic Initiation Factors Gene Family AT3G19760 33.245 1.55e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02661 - - gmx:100786041 907.131