Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02657 ATGGCTTTCTTCAGGAACTTTACAAATGATACAGTCTCACATGGTGTCTTGGAAGATAAAACCCAAGGACAGAATGCAAATAGAACTCATAGATCAGTAGGTAATGAGTGTACCGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGAGGGCGAACCTAATGGTTCCGGGAGACTGCAAACTGAGGCAACAACTGATGACGGAGATGCTGTGAAAGACTCAAATTTGCAGACTGCTGGTAGTAAAACAGCTACAATGGGAAGGTGGGGTTCAACATTTTGGAAGGACTGTGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCTGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCAGAAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGGCCAAGAGGTCTCTCAGATGTTCCTGCTGAAGAGATGTTGTCAGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTGCACTATGGTGGTATCAAAAAGCCCTCTGAATCAAATTCATGGCCACAACGGATGTCAACCACTGCAAATAGAACTTTGCATAGGAATTCAAGGTTTTCAGATGATGCTGAAGATGATGACGATGATGATGGAGATAATGATAACGATGGTGATGATGCTGATTATGAAGAGGAGGATGAAGCAGATGAAGATGACCCTGATGATGCAGACTTTGAGCCTGCCACAACTGGTCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGACAGTGATGAAAATATAGCTGTCTCAGATGATGATGAATCTTTCTATGCAAAAAGGCCTAAAGGAAGGCAACGAGGTAAGATTGGACAAAACATAAAATCTACCAGAGATCGCAAAGCGTATGCTGCATCTGGTCGGCAAAGAAGACTTAAATCATCTTTTGAGGACAATGAGTCAACAACAGAGGACTCTGACAATAACAGTGATGAGGATTTCAAAAGCTCAAAAAAGCGGGGTGTTCATGCTCGTAAAAATAATGGTCGTTCTTCTTCAGCTACTGGTCTTTCCATGCGCAACAGTGAGGTTCGGACATCTAGTAGGACTGTTAGAAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTCGATGAAGGGAAAAAGAAAAAGACCCAAAAGGAAGAAATTGATGAGGAAGATACTGATTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCACAGCTGAAGATGCCGAAAGGAATAACCGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAATGGAAATCTTTTGCGGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTACAGGAGGTCAATTTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATAAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGTAAAGATAATTCTGGCGATGTTATTCCAGAATACTTGGTCAAGTGGCATGGACTATCTTATGCTGAAGCAACTTGGGAAAAGGACACTGATATTGCTTTTGCCCAAAATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCAGTGCAAGGAAAGATGGTGGATTCTCAGCGTAAGAAAAGTAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGTAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTCTCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCTATGGTCCTTTTCTTGTAGTTGTTCCGCTCTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGAGCTAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGAAAAAAGACCAGGGAAGCCCATAAAATTCAATGCACTTTTGACGACATATGAAGTAGTTTTGAAGGATAAGGCCGTTCTGTCCAAAATCAAATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGTTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCCTTGCTTCATTTCCTTGATCCTGATAAGTTCAGGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCACACAGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCTCCCAAAATTGAGCGTATCCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGAGACTCGGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGGGTTTTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTCGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATCAACCTTGCCACAGCCGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGATCTGCAGGCAATGAGTAGAGCTCACAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAAAAAATGGTTCTGGACCACTTGGTGATTCAAAAATTGAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGCAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCCGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAAAGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGATGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTTTGGAGCCGATGGATAAAGCCTGATTCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCAGAAAGAACTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGTCGGAAACCAGAGTATTCTGCTCCTGCAGTACCAATGATTGAAGGAGCATGTGTTCAAGTGAGAAGTTGGTCATATGGAAATTTATCAAAAAGAGACGCACTTCGTTTTTCTCGTTCGGTTATGAAATATGGCAATGAGAGCCAGGTTGACTTAATTGCTGCCGAGGTGGGTGGTGCGGTTGGTGCAGCTCCAACTGGAGCACAGGTTGAACTTTTCAATGCTCTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGTAATTTAGATGTGAAGGGGCCTCTGCTGGACTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTACCCGTGTCCAGCAACTTCAACTTCTGGCAAAGCGTATTGATCGATATGAAGATCCTATTGCTCAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCTAAAGTTGATGATGCTAGATTGCTTCTTGGCATATATTTCCATGGTTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACGAAAAAAATTGCACCGGTAGAACTTCAACACCATGAAACTTTCTTACCACGGGCTCCAAATTTAAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTTGGTGTGAAAAATACCAATAGCAAAGTCGGACGGAAGCCTTCAAAGAAAGAGAGAGATAATGTCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCAGGTTCTGTTAATGTCCAAATGAGAAAGGATAGATTTCAGAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAACAGTTTAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTTGAAGAAATGAAGACATTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCCAAGGAGAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAGCCCTATAAGCAAGATAGAATGACAGTGCGACTGTGGAAATACGTCTCCACTTTTTCCCATCTTTCAGGGGAACGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGTGTTGGCCCCTCTCACGGCAATGGATCAGTATCTGCTTCATTTACCAGAAATGGGAACCTATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGAGTACCTATCAAACGCCAGAACCAGTTGATAATAGTGGAAAATCTGAGGCATGGAAGCGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCAGCTCAAAGGAGCGGAAGTAATGGAGTCCGGATAACTGATCCTAACTCACTCGGGATCCTTGGTGCTGGGCCGTCGGACAAACGGTTTGGTAATGAGAAACCTTACAGGACACAACCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAA 5262 0.4109 MAFFRNFTNDTVSHGVLEDKTQGQNANRTHRSVGNECTDATSSEKEFDMNMEAQYESEGEPNGSGRLQTEATTDDGDAVKDSNLQTAGSKTATMGRWGSTFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRAERLDSDDDDGQKEAGKGPRGLSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPSESNSWPQRMSTTANRTLHRNSRFSDDAEDDDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATTGHAGNKDKDWEGEGSDEDDDSDENIAVSDDDESFYAKRPKGRQRGKIGQNIKSTRDRKAYAASGRQRRLKSSFEDNESTTEDSDNNSDEDFKSSKKRGVHARKNNGRSSSATGLSMRNSEVRTSSRTVRKVSYVESEESEEVDEGKKKKTQKEEIDEEDTDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGDVIPEYLVKWHGLSYAEATWEKDTDIAFAQNAIDEYKAREAAMAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIYGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNEKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLFITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSERTNKRKKKEPEPPERVQKRRKPEYSAPAVPMIEGACVQVRSWSYGNLSKRDALRFSRSVMKYGNESQVDLIAAEVGGAVGAAPTGAQVELFNALIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIDRYEDPIAQFRVLSYLKPSNWSKVDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNTNSKVGRKPSKKERDNVISLVRGQEKKKKSGSVNVQMRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSASFTRNGNLFRRHMERQRGLKNMSTYQTPEPVDNSGKSEAWKRRRRAESDNQFQGQPPAQRSGSNGVRITDPNSLGILGAGPSDKRFGNEKPYRTQPGGFPSRQGFSSGIK 1753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02657 1753 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 759 768 IPR002464 -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 14 447 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 367 393 - -
Viun8g02657 1753 ProSiteProfiles Chromo and chromo shadow domain profile. 424 512 IPR000953 -
Viun8g02657 1753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 949 1100 IPR001650 -
Viun8g02657 1753 Gene3D - 539 591 - -
Viun8g02657 1753 Gene3D - 620 859 IPR038718 -
Viun8g02657 1753 Coils Coil 1089 1109 - -
Viun8g02657 1753 SMART DUF4208_2 1518 1623 IPR025260 -
Viun8g02657 1753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 850 IPR027417 -
Viun8g02657 1753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 641 813 IPR014001 -
Viun8g02657 1753 SMART helicmild6 975 1059 IPR001650 -
Viun8g02657 1753 SMART ultradead3 625 825 IPR014001 -
Viun8g02657 1753 Gene3D - 1349 1454 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 1627 1753 - -
Viun8g02657 1753 CDD SF2_C_SNF 935 1070 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 222 257 - -
Viun8g02657 1753 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 174 1682 - -
Viun8g02657 1753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 853 1135 IPR027417 -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 1662 1676 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 1678 1692 - -
Viun8g02657 1753 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 860 1090 - -
Viun8g02657 1753 FunFam Photoperiod-independent early flowering 1 599 873 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 196 214 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 78 96 - -
Viun8g02657 1753 SUPERFAMILY Chromo domain-like 516 592 IPR016197 -
Viun8g02657 1753 CDD CD2_tandem 535 591 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 1215 1250 - -
Viun8g02657 1753 Pfam SNF2-related domain 648 917 IPR000330 GO:0005524|GO:0140658
Viun8g02657 1753 Pfam Chromo (CHRromatin Organisation MOdifier) domain 538 592 IPR023780 -
Viun8g02657 1753 Gene3D - 860 1090 IPR027417 -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 1693 1713 - -
Viun8g02657 1753 Pfam Helicase conserved C-terminal domain 946 1059 IPR001650 -
Viun8g02657 1753 SMART chromo_7 423 505 IPR000953 -
Viun8g02657 1753 SMART chromo_7 535 594 IPR000953 -
Viun8g02657 1753 SUPERFAMILY Chromo domain-like 420 504 IPR016197 -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 126 157 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 275 292 - -
Viun8g02657 1753 Coils Coil 1143 1163 - -
Viun8g02657 1753 ProSiteProfiles Chromo and chromo shadow domain profile. 537 601 IPR000953 -
Viun8g02657 1753 Pfam Domain of unknown function (DUF4208) 1530 1622 IPR025260 -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 14 40 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 394 446 - -
Viun8g02657 1753 CDD CD1_tandem 424 502 - -
Viun8g02657 1753 Gene3D - 410 536 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 312 340 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 105 125 - -
Viun8g02657 1753 FunFam Chromo domain-containing protein 1 412 537 - -
Viun8g02657 1753 FunFam protein CHROMATIN REMODELING 5 isoform X2 539 591 - -
Viun8g02657 1753 MobiDBLite consensus disorder prediction 1220 1248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02657 Viun-Chr8 35536057 35555547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02657 651 1086 RAD5 or RAD16-like Gene Family AT1G02670 25.595 1.00e-33 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun8g02657 SNF2_N 1.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02657 K11367 - gmx:100792398 3125.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02657 8 35536057 35555547 Viun8g02657 8 35536057 35555547 ECH