Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02648 ATGATTGATAAAAGATGGCCCTACTCTTTTCAGCCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTCTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTGATTTCCCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGAAGGTATTCCGTCTGAGGCTAATAGTCCTCGAACCTACACAAGAAGAAGTTCTCCGTTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGAAAAAGGATAGTGGGGATCACCTACGCCTTCATAGCCCATATGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTGGATGTGGTTTTGTATGCTGTCCCTCAAAAGGCTTTCTATCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCTGGAGGATCAGACAGCATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCCGTTAGCACCTCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTTATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCAACGAGTTGGGAGTTGTTTGGGTGTGAAAATGGATTCTCTATTTCCGAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTGCAGAATATTGCTTGCGGTGGACGACATGCGGCCCTAGTGACCAAACAAGGTGAAATTTTCTCTTGGGGAGAGGAATCAGGTGGCAGACTTGGGCATGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGATGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCACACATGTGCTGTGACGCTTTCTGGTGATCTTTATACGTGGGGTAATGGTGCATACAATTATGGCCTTCTGGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGAACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTAGAATCCCTCAAGGGTCTTCGTACTGTGCGGGCTGCGTGTGGTGTTTGGCATACAGCTGCAGTCGTGGAAGTCATGGTTGGAAATTCAAGTTCTAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGGCGACTTGGGCATGGTAGTAAGGAAGAAAAACTTGTTCCTACCTGTGTTGCCCTCATTGAACACAATTTTTGTCAGGTCGCTTGTGGACATAGTCTTACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGCAGTCCTGTCTATGGCCAATTAGGCAATCCTCAGGCTGATGGGAAGCTACCAATACGTGTTGAAGGGAAATTGTCAAAAAGTTTTGTGGAGGAGATAGCTTGTGGTGCGTATCACGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACCTGGGGAAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCGACATTAGTTGAAGCTCTGAAGGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCTGGTGTTGACCAGTCTATGTGTTCGGGCTGTCGTATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCGATGGCACCAAACCCCAACAAACCGTATCGTGTGTGTGATAATTGTTTTAATAAACTTAGGAAAACAGTAGAAACTGATTCTTCGTCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCATGGGTCGCTGGAGTTAATCGATAAGGATGATAAATTAGATTCTAGATCTCGAAATCAACTTGCAAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCACCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCTGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCGATATCTAGACGACCTAGTCCACCTCGCTCAACCACACCGACCCCAACCCTAGGAGGTCTTACATCACCAAAGATAGTTGTGGATGATGCTAAGAGGACTAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTCCAAGAAGTTGAACTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCTGGGGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGACCTGCTAGGAATGTGAAATCACCGTCTCTTGCTTCTTCTTTTGGTTCTAATCCTTGTTCCAATGATGTTAACTATGCTTCCATTGACCGATTAAATATTCAAGCATTAAGTCCAGAGGCAGATTTAACTGCATCAAACAACCAGATTCTTTCAAATGGATCAGGCACTGCTAGCAACCGAAGTGCAGGTCACAATAAACAGAGCCAGTCTGATTCAACAAATAGAAATGGGAGCAGAACAAAAGACTGTGAATCCCGTAGTGAAAGTGAATGGGTCGAGCAAGATGAACCTGGTGTTTATATTACGCTCACCTCCCTTCCAGGAGGTAAAATAGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGAGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACGATGTGCTGATGATTGACAAGTCTTCTGTGGGAGTTGGGGGTGAGGAGCTGGCTCATTGA 3111 0.4368 MIDKRWPYSFQPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSEGIPSEANSPRTYTRRSSPLNSPFGSNESLKKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKAFYPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNQRVGSCLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEEKLVPTCVALIEHNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGSVNHGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGPARNVKSPSLASSFGSNPCSNDVNYASIDRLNIQALSPEADLTASNNQILSNGSGTASNRSAGHNKQSQSDSTNRNGSRTKDCESRSESEWVEQDEPGVYITLTSLPGGKIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYDVLMIDKSSVGVGGEELAH 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02648 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 365 413 IPR000408 -
Viun8g02648 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 258 306 IPR000408 -
Viun8g02648 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 309 361 IPR000408 -
Viun8g02648 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 533 580 IPR000408 -
Viun8g02648 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Viun8g02648 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 479 528 IPR000408 -
Viun8g02648 1036 SMART fyve_4 582 651 IPR000306 GO:0046872
Viun8g02648 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 244 254 IPR000408 -
Viun8g02648 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 717 731 - -
Viun8g02648 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 429 479 IPR000408 -
Viun8g02648 1036 SUPERFAMILY FYVE/PHD zinc finger 584 655 IPR011011 -
Viun8g02648 1036 FunFam PH, RCC1 and FYVE domains-containing protein 1 167 418 - -
Viun8g02648 1036 FunFam Putative E3 ubiquitin-protein ligase HERC1 590 658 - -
Viun8g02648 1036 FunFam PH, RCC1 and FYVE domains-containing protein 1 419 589 - -
Viun8g02648 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 258 309 IPR000408 -
Viun8g02648 1036 Pfam Unstructured region between BRX_N and BRX domain 887 956 - -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 762 790 - -
Viun8g02648 1036 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Viun8g02648 1036 PRINTS Chromosome condensation regulator RCC1 signature 469 487 IPR000408 -
Viun8g02648 1036 PRINTS Chromosome condensation regulator RCC1 signature 310 326 IPR000408 -
Viun8g02648 1036 PRINTS Chromosome condensation regulator RCC1 signature 367 381 IPR000408 -
Viun8g02648 1036 PRINTS Chromosome condensation regulator RCC1 signature 527 548 IPR000408 -
Viun8g02648 1036 PRINTS Chromosome condensation regulator RCC1 signature 241 254 IPR000408 -
Viun8g02648 1036 PRINTS Chromosome condensation regulator RCC1 signature 260 276 IPR000408 -
Viun8g02648 1036 ProSiteProfiles PH domain profile. 1 58 IPR001849 -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 951 965 - -
Viun8g02648 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 351 361 IPR000408 -
Viun8g02648 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Viun8g02648 1036 Gene3D - 424 596 IPR009091 -
Viun8g02648 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 657 IPR013083 -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 72 100 - -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 708 731 - -
Viun8g02648 1036 Pfam FYVE zinc finger 584 650 IPR000306 GO:0046872
Viun8g02648 1036 Pfam Transcription factor regulating root and shoot growth via Pin3 962 1017 IPR013591 -
Viun8g02648 1036 Coils Coil 794 835 - -
Viun8g02648 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 196 257 IPR000408 -
Viun8g02648 1036 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 588 650 IPR017455 -
Viun8g02648 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 364 IPR000408 -
Viun8g02648 1036 CDD FYVE_like_SF 593 646 - -
Viun8g02648 1036 SUPERFAMILY PH domain-like 12 57 - -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 64 120 - -
Viun8g02648 1036 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 22 870 - -
Viun8g02648 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 403 413 IPR000408 -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 918 950 - -
Viun8g02648 1036 Pfam Transcription factor BRX N-terminal domain 845 878 IPR027988 -
Viun8g02648 1036 Gene3D - 320 417 IPR009091 -
Viun8g02648 1036 Gene3D - 146 319 IPR009091 -
Viun8g02648 1036 MobiDBLite consensus disorder prediction 918 965 - -
Viun8g02648 1036 ProSiteProfiles BRX domain profile. 963 1018 IPR013591 -
Viun8g02648 1036 Coils Coil 850 870 - -
Viun8g02648 1036 Gene3D - 9 66 IPR011993 -
Viun8g02648 1036 SUPERFAMILY RCC1/BLIP-II 195 585 IPR009091 -
Viun8g02648 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02648 Viun-Chr8 35507158 35514663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02648 854 1027 Major Intrinsic Protein MIP AT1G31880 32.222 1.47e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02648 - - gmx:100802464 1865.51