Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02646 ATGGAAGAATCAAGTGAACTGCAATCAGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAGCTGAAAACACCAGCCCAACTTACGGCCTTGGAGAAATTTTATGATGAGCACAAGTACCCCACAGAGGAAATGAAAGTAGAGCTTGCTGAGGAGTTAGGATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAGGATAAAAGATTGATGAAAGACGAAGCGGTTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGCGGCAGTGGACTTGGGCAAGATTCTTGTGGAAGCAGTAAACATGCTGATTACAGGTATCTGGATGCTAAGGAGGTTGAGAGCCATGGCTTCTACAACAACGAAATATCTGTTGCAGACATGACACAAAGACGAAGGAACCATTACCTTGAAAATGTTAGTGGAGTGGATGACACATCATCTGAGAGCAGCTCTTTCTTGCAAGAAAGGGCTTTTGCTCAAGGTCAGGATCCATATGATATGGACCCTTCTAGACATCTTACACCTAACGGAGCTCTTCCACCCCTGAATCCCAAAGGTGCAGTTAACCTTGGATACAAACCATCAGGATATTTGAAATTGAAGGGTGAGATAGAACATGCAGCTATCACTGCTGTTAAGAAACAACTAGGAAGGCATTATGAGGAAGATGGTCCGCTACTCGGTATAGAATTTGATCCGCCTCCTCCGGGGGCCTTTGAGTGCCAAACTGAAGATCCAGCTAATGAACCATTTTGTGTAGCAAATGCTCCGGTTCTGAATTCTCCAGAAATCTCTGCTGCAAAAAAACCCAATCTTAGCTCTGATAAACAAGATAAGAAAGCCCGTCAGAATATAAAACAAAGGCAACCTTACCACGGTTACAACACCCATGTTTCTGGAAGGAACCCTTTCCCTGATTTGTATGAAGATTCTACTGGAGAAGCATCTGGCTATAACAGTGCTAAGAATCATAGAATGAGCACTAAGCATGGGGTTGAGGGGATGCGATCTGATTCTGCTTCTAACCACAGTGATCACTTTGAGGAGAAGCTTGCGATTAAGCCGAAAGACTTGATGCTGCATGGTTATGATAAGATCAATCCAAAGAGAATACAAAAGAGTGGACATGTTAAATCTAAACCTTCTAGTTCAATCCGTAACTCCCGTGTTCCCATGGATACTGAAGAAAGGGGATTATCTGCTAGGATGGCAAAGGAAGAGATGTTTAAGCTGGACCAGAAAGCAAAGAACACATACCGCGATGTAGATGGGAGGCTTTCAAATGAAATCCTGGTTGCAAAGAGAGCTAAAGTTGACATGCTTCAACAATACCATGTGAAACCATCACCTGTTGCTGAGATGGAGCAAAGGAAAATTCACAGATCTGCTGCAGAGATGCCTTCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCACTAGATTATTAG 1485 0.4269 MEESSELQSEENKVSNEKNKKRKLKTPAQLTALEKFYDEHKYPTEEMKVELAEELGLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDAKEVESHGFYNNEISVADMTQRRRNHYLENVSGVDDTSSESSSFLQERAFAQGQDPYDMDPSRHLTPNGALPPLNPKGAVNLGYKPSGYLKLKGEIEHAAITAVKKQLGRHYEEDGPLLGIEFDPPPPGAFECQTEDPANEPFCVANAPVLNSPEISAAKKPNLSSDKQDKKARQNIKQRQPYHGYNTHVSGRNPFPDLYEDSTGEASGYNSAKNHRMSTKHGVEGMRSDSASNHSDHFEEKLAIKPKDLMLHGYDKINPKRIQKSGHVKSKPSSSIRNSRVPMDTEERGLSARMAKEEMFKLDQKAKNTYRDVDGRLSNEILVAKRAKVDMLQQYHVKPSPVAEMEQRKIHRSAAEMPSSFSEDETAETSSSLDY 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02646 494 MobiDBLite consensus disorder prediction 88 106 - -
Viun8g02646 494 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Viun8g02646 494 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Viun8g02646 494 SMART HOX_1 18 80 IPR001356 GO:0003677
Viun8g02646 494 MobiDBLite consensus disorder prediction 82 108 - -
Viun8g02646 494 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 280 - -
Viun8g02646 494 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Viun8g02646 494 MobiDBLite consensus disorder prediction 1 26 - -
Viun8g02646 494 MobiDBLite consensus disorder prediction 7 26 - -
Viun8g02646 494 MobiDBLite consensus disorder prediction 459 494 - -
Viun8g02646 494 MobiDBLite consensus disorder prediction 478 494 - -
Viun8g02646 494 Gene3D - 8 92 - -
Viun8g02646 494 MobiDBLite consensus disorder prediction 273 352 - -
Viun8g02646 494 CDD homeodomain 20 75 IPR001356 GO:0003677
Viun8g02646 494 MobiDBLite consensus disorder prediction 382 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02646 Viun-Chr8 35491672 35496759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02646 3 493 Homeobox Transcription Factor Family AT4G03250 39.591 8.64e-85 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun8g02646 Homeodomain 1.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02646 - - gmx:100803515 796.193