Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02639 ATGTGGTCCGGCGCCAGCAGGTCGATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCGTCCTTCCACCACCATCACCACCACCAGCAACAGCCCCCGCACGACCCCGTCATGGCAGATTCCCTCAACCCCGCCACTGCACTCGGCGTCGGCGTCATCCCTCTTCTTGCCGCCACGCCGTGTCTGGAATCCGACAACTTTCTCGGAAACAGGTCACGTGGTGGGGGAATTCAGTTTTGGCAAGACCAAGGGCCCCATCAGAGCCACTACATGAAGAAGCAGCAGCAGGGGCTTCTCGACCAAAGTAACACGAGTTCTGGAAATTTGGTTCAAACCAGTGGCGGCTTAACTGCTTCGGGTACCAGTAGTGGGGGAACTACGTGCCAGGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACTTGCTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTCCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACTGCGGCCACTGCGGCGGTCGCTGGCTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGGCTCATTGCTTCGCAAACCACTACAACATCTCACACTTCCACCTCCAACACCACCCCTCCCAGAAGCTTCGACACAAGCTCTAGCCATCAAGATGCGGGGTTCAAGGAGTCTTTACCTGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGACGGGCAAGACGAGTACGCGTACCAGGCTGTGGTGAAGATCGGTGGGCACGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCGGAGTTGCATTTGGGTGGTGGAAACGGCGGAAGTGGGAGCGGAGGGAGTGGTGGGGTGGGGAGAAATGGGGTTTCTTCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGCAGGTTCGGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAACTGA 1053 0.5584 MWSGASRSINYPEMGMFVVAPASSFHHHHHHQQQPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNFLGNRSRGGGIQFWQDQGPHQSHYMKKQQQGLLDQSNTSSGNLVQTSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSSPMMDPSDVYAGSGGGLLGGSSAYGNPMN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02639 350 MobiDBLite consensus disorder prediction 101 138 - -
Viun8g02639 350 NCBIfam LRP1 C-terminal domain 237 284 IPR006511 -
Viun8g02639 350 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 23 332 IPR007818 GO:0003700|GO:0006355
Viun8g02639 350 NCBIfam putative zinc finger domain, LRP1 type 130 172 IPR006510 -
Viun8g02639 350 MobiDBLite consensus disorder prediction 182 233 - -
Viun8g02639 350 MobiDBLite consensus disorder prediction 300 350 - -
Viun8g02639 350 MobiDBLite consensus disorder prediction 178 237 - -
Viun8g02639 350 MobiDBLite consensus disorder prediction 312 327 - -
Viun8g02639 350 MobiDBLite consensus disorder prediction 101 139 - -
Viun8g02639 350 Pfam Domain of unknown function (DUF702) 128 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02639 Viun-Chr8 35441836 35444553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02639 13 330 C2H2 Transcription Factor Family AT5G12330 52.836 3.83e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun8g02639 DUF702 7.8e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02639 - - vun:114194574 609.757