Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02611 ATGGCTTTCACACTAGAGAGGTGTGAAGATAGCATGGTGTTCACCATGGAGTCTCAGAAATCTGTGCCTGCTCCATTTCTGACAAAAACATACCAACTTGTTGATGATCCTCGCACTGACCACATTGTGTCTTGGGGTGATGATGAAACCACTTTTGTTGTGAGAAGACCCCCAGAGTTTGCTAGAGATCTTCTTCCAAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGACAGCTAAATACCTATGGTTTCAAGAAGGTAGCTGCTGATAGATGGGAGTTTGCAAATGAATACTTCAGAAAAGGATCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAGCCCCTCACCCTTATCAACAACATTACCATATGCATGACCAACCACCACAGCTTCTTCAGCCAGATGAGAATCTGTGTTGGATTGATACTCCTCCATTACCATCTCCTAAGCCAGGGAATGATATCTTAACAGCACTTTCTGAGGACAACCAGAGACTGAGGAGAAAGAACTTCATGCTGTTATCAGAACTCACCCACATGAAGAATCTATACAATGACATCATATATTTCATACAAAATCATGTAAGTCCTGCTTCCTATGAACAAAGAAGCAGCAGTGCTATTCTGAAGCTGGTAGAATTGGATTCATCACCTCATCAATCTCCAAGTTTTATTAGACCAGTTAAGAGCCATATCATGGAAAAGTCTTTGGTAAGTTCTTCTAGTGATGAGCCTAATAGTTCTGTGAAGCTCTTTGGGGTTCCTCTATGTGGCAAAAAGAGATTGCACCCAGGTAACCTTGATCAACAAGAATAG 825 0.4133 MAFTLERCEDSMVFTMESQKSVPAPFLTKTYQLVDDPRTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGSKHLLCEIHRRKAPHPYQQHYHMHDQPPQLLQPDENLCWIDTPPLPSPKPGNDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPASYEQRSSSAILKLVELDSSPHQSPSFIRPVKSHIMEKSLVSSSSDEPNSSVKLFGVPLCGKKRLHPGNLDQQE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02611 274 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g02611 274 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g02611 274 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g02611 274 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g02611 274 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g02611 274 FunFam Heat stress transcription factor B-4 18 116 - -
Viun8g02611 274 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Viun8g02611 274 Gene3D - 18 116 IPR036388 -
Viun8g02611 274 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun8g02611 274 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 231 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02611 Viun-Chr8 35301836 35303513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02611 20 266 HSF AT1G46264 49.832 1.45e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun8g02611 HSF_DNA-bind 1.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02611 K09419 - gmx:100776060 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02611 8 35301836 35303513 Viun8g02611 8 35301836 35303513 ECH