Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02583 ATGAGGAAGAAACTGGATACTCGTTTTCCTGCGGCCAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTTTAGTTTCTAAAGCACTAGAGCTATTTCTACAAGATTTGTGTGATCGAACATATGAGATAACTTTGAGGAGGGGAGCCAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACCTTTAACGTCTTTGACTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGTGGTTCTGTTGCAAATGGTGATGACCACACTGTCAAGAGGAGGAAAGTTGCTGAAGATGATAATGATAGCCACGAGGAGCCCAAAAGAAATAACAAGGCGGAGCCGGGACAAACCAGCGGCAGAGGAAGGGGTAGGGGAAGAGGAAGGGGTAGGGGCAGAGGAAGTAGAAATGTAGTAGATCAAGAGATGAGTTCACAAGCCAAGTGTGAAGAAGATTCTGAGGCATTGAAGCAAAATGAAAAGCAGAGTCAAAGCAATGAAAGCATGGAAAACGCATCATCACCTGAAGAAGTTAAGCAGAGTTTTCCGGTGAGCAAGCCGGCTCAGGTGTCGATTCGAAATTTTGACTTAAACATGGACCCAGATGAGAATATGGAATCGTTAACATCACCAACTGCTGTTCCAACCAGTTCATCAGCAAAATCAATATCAGAAGAGAAACATCATGAGGAATATCCTGGATGGTCCTTGTCTGATATGGAAAAAATGTCCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAAATGTAA 840 0.419 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVANGDDHTVKRRKVAEDDNDSHEEPKRNNKAEPGQTSGRGRGRGRGRGRGRGSRNVVDQEMSSQAKCEEDSEALKQNEKQSQSNESMENASSPEEVKQSFPVSKPAQVSIRNFDLNMDPDENMESLTSPTAVPTSSSAKSISEEKHHEEYPGWSLSDMEKMSIDPIQLANINGRIDEDEEDYDEEM 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02583 279 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Viun8g02583 279 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 162 - -
Viun8g02583 279 MobiDBLite consensus disorder prediction 170 203 - -
Viun8g02583 279 MobiDBLite consensus disorder prediction 214 232 - -
Viun8g02583 279 FunFam dr1-associated corepressor homolog 1 86 - -
Viun8g02583 279 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Viun8g02583 279 MobiDBLite consensus disorder prediction 90 249 - -
Viun8g02583 279 MobiDBLite consensus disorder prediction 233 247 - -
Viun8g02583 279 MobiDBLite consensus disorder prediction 98 123 - -
Viun8g02583 279 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02583 Viun-Chr8 35046912 35050659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02583 1 268 CCAAT-HAP5 Transcription Factor Family AT3G12480 45.734 4.31e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun8g02583 CBFD_NFYB_HMF 2.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02583 K21752 - gmx:100814800 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02583 8 35046912 35050659 Viun8g02583 8 35046912 35050659 ECH