Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02578 ATGTCAAGTGGAGCAACACACTGGTGTTATGCATGCAGACAACCAATTGTGCTTGATGGGGGAGACACTCTCTGTCCTTACTGTGATGGAGGTTTTATACAAGAACTTGATGAGTTGCGAGGAGCAGCGCCGGCACCCCAGCACACATATTCTTCATCACAGTCCGGAGAGTTTCATCAAATGCCCGACCTTTTTGATGCCATACATGCTTTCATGGGGCAGAGAGGTTCTGACCAGAGATTCGGGCTTATGGATGCTGTTGATAACTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAACTTTGATGTTAGAGCAAGGTCAGGTTCTTTCCCAGTTCCTGAACAACAGGGTTGGGGTGTTTTCAGTTCTGGTCCTTATTTGATATTTCATGGCCAAGTTCCTGGATTCACCTTGGCCACTGGCAGCCCTAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTCATGGGTCCTGGACTGGAAGAACTCATTGAGCAACTCACCATGAATGACCGGCGAGGTCCACCGCCGGCGGCACGATCTTCGATCGATGCTATGCCTACTATTAGGATCACACAGGCACATCTTCGCTTGGATTCTCACTGTCCAGTTTGTAAAGATAAATTTGAACTTGGCACTGAAGCCAGAGAGATGCCATGCAATCATATCTACCATTCTGACTGCATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGTTGCCACCTCAAGGACAGGTTAGTTCCCGCGGTGCTCGAAGTTTGGGAGGAAGGAATGCCAGCACCAGCACCACCAGCGGCGGTGGTGGTGGCAGTGACAGCAGCTCCAGGAGCAGGGAGAACAACAATAACAACAACAACAACCCTCAGAACCATGGAAGGAGAAACCCCTTATCATTTTTGTGGCCATTTCGCTCCTCTTCTAGCTCAAACAATAGTCATTATTCTGAGAATGGTGGAAGCAGCTCTTCAACCACTCCTGATCAGAATAATGGAACAAGTTATAGTGGCTGGCCTTTTGATCACTAG 1050 0.4829 MSSGATHWCYACRQPIVLDGGDTLCPYCDGGFIQELDELRGAAPAPQHTYSSSQSGEFHQMPDLFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRARSGSFPVPEQQGWGVFSSGPYLIFHGQVPGFTLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVSSRGARSLGGRNASTSTTSGGGGGSDSSSRSRENNNNNNNNPQNHGRRNPLSFLWPFRSSSSSNNSHYSENGGSSSSTTPDQNNGTSYSGWPFDH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02578 349 MobiDBLite consensus disorder prediction 254 349 - -
Viun8g02578 349 MobiDBLite consensus disorder prediction 251 349 - -
Viun8g02578 349 SUPERFAMILY RING/U-box 184 251 - -
Viun8g02578 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 249 - -
Viun8g02578 349 FunFam E3 ubiquitin-protein ligase RING1-like 168 251 - -
Viun8g02578 349 Pfam Ring finger domain 203 245 IPR001841 -
Viun8g02578 349 SMART ring_2 204 244 IPR001841 -
Viun8g02578 349 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Viun8g02578 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 251 IPR013083 -
Viun8g02578 349 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Viun8g02578 349 CDD RING-H2_RNF126-like 204 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02578 Viun-Chr8 35025247 35027997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02578 148 262 C3H Transcription Factor Family AT5G01980 41.880 8.59e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02578 K11982 - gmx:100813674 579.711