Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02567 ATGGGAAACTGCTGCAGAAAACCAGTGGCTCATGTGTCTTCCACAAGTTTCTTTGGAGGCTCAAAGTCTCGAAGTAAGACAAAAGAGAACTCAAAATCTAGTGAAGGAAAAGCTCCTTTAAAAACTTCAGGATCAAATGTTGACAAACCCATCTCCAGTAACCTAAAGTCTTTCACCTTCAATGAACTAAAAGAGGCCACTAAGAATTTCAGGCAAGAAAACTTGATTGGAGAAGGAGGGTTTGGGTTTGTATACAAGGGATGGATAGATGAGAACACTTATGCTCCCACAAGACCAGGGACTGGAATTGTTGTGGCCATCAAAAAACTTAAACCAGAAAGTTTTCAAGGCCACAGAGAATGGCTGGCAGAAGTCAATTATCTAAGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGTTCAGATGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCATAAAGGAAGTTTGGAAAATCATTTATTCAGAAGAGGTGTTCAGCCTATTCCCTGGACTATCCGGATCAACATTGCAGTTGCTGTTGCAAGAGGATTAACATTTTTACATACCCTCGATGCAAATGTTATATACCGTGATTTAAAGGCAGCCAACATCCTACTTGATTCGGATTTCAACCCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACAGGAGACAACACTCATGTTTCAACCAGAGTTATTGGTACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCATTTGACCCCAAGGAGTGATGTATACAGTTTTGGAGTTGTGTTGTTGGAGTTACTTACAGGAAGGCGTGTAGTCGAAGATGAAAGACCTGGATTTTCAGAAGAAACATTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGCAGAAGAATTTTGAGAATCATGGACACAAGATTAGGTGGCCAATACTCCAAGAGAGGAGCACAAGCCGCAGCAACACTTGCACTACAATGTCTAAATGCAGATCCAAAACACAGACCAACTATGGTGAATGTTCTAGCAGCATTGGAAGCACTAAGTTCCTCAAATTCATTTCCAAGGACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCATTCTAGTCATTCTCAAAAATCAGCTGTAAATAATAACAGACTATGA 1170 0.4085 MGNCCRKPVAHVSSTSFFGGSKSRSKTKENSKSSEGKAPLKTSGSNVDKPISSNLKSFTFNELKEATKNFRQENLIGEGGFGFVYKGWIDENTYAPTRPGTGIVVAIKKLKPESFQGHREWLAEVNYLSQLHHENLVKLIGYCSDGKNRLLVYEFMHKGSLENHLFRRGVQPIPWTIRINIAVAVARGLTFLHTLDANVIYRDLKAANILLDSDFNPKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERPGFSEETLVDWARPFLSDSRRILRIMDTRLGGQYSKRGAQAAATLALQCLNADPKHRPTMVNVLAALEALSSSNSFPRTPKSGTENHTTKHSSHSQKSAVNNNRL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02567 389 CDD STKc_IRAK 76 354 - -
Viun8g02567 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02567 389 Gene3D Transferase(Phosphotransferase) domain 1 156 378 - -
Viun8g02567 389 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
Viun8g02567 389 FunFam PTI1-like tyrosine-protein kinase 3 156 362 - -
Viun8g02567 389 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02567 389 MobiDBLite consensus disorder prediction 358 389 - -
Viun8g02567 389 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02567 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Viun8g02567 389 FunFam Serine/threonine-protein kinase BIK1 38 155 - -
Viun8g02567 389 PANTHER OS01G0588500 PROTEIN-RELATED 29 354 - -
Viun8g02567 389 MobiDBLite consensus disorder prediction 16 48 - -
Viun8g02567 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Viun8g02567 389 SUPERFAMILY Protein kinase-like (PK-like) 46 352 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02567 Viun-Chr8 34971558 34975005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02567 48 357 Glycoside Hydrolase AT3G07070 51.746 2.04e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun8g02567 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02567 - - pvu:PHAVU_008G205600g 724.546