Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02564 ATGAGTCAGCCTAAGATCAAGCGCAGAGTTGGTATATACGAGGTGGGGAGGACAATTGGTGAAGGTACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGAGAACCTGTGGCTCTGAAAATTCTTGACAAGGAGAAGGTGCTCAAGCACAAGATGGCTGAGCAGATCAGGAGAGAGGTGGCTACAATGAAATTAATCAAGCATCCAAATGTTGTTCGATTGTATGAGGTGATGGGAAGCAAGACAAAAATATACATTGTTTTGGAGTTTGTGACTGGTGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGTATGAGTGAAAATGAAGCACGTAGATATTTCCAACAGCTTATAAATGCTGTTGATTATTGCCACAGCAGGGGTGTCTACCACAGAGATCTGAAGCCAGAGAATTTGCTCTTAGATACTTATGGGAACCTTAAAGTTTCCGACTTTGGATTGAGTGCCCTCTCCCAGCAAGTTAGGGATGATGGGCTTCTCCATACTACATGTGGGACACCAAACTATGTTGCTCCAGAGGTCCTTAATGATAGAGGCTATGATGGGGCAACTGCAGATTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCGGGTTACTTACCTTTTGATGACCCTAATCTTATGAACCTGTATAAGAAAATCTCAGCTGCTGAATTTACTTGCCCCCCGTGGCTTTCTTTTAGTGCCAGGAAATTGATTACACGAATCTTGGATCCTGATCCCACAACTCGTATCACTATACCTGAGATTTTGGATGATGAATGGTTCAAGAAAGATTACAAGCCTCCAGTTTTTGAGGAGAATGGGGAAATCAACCTTGATGACGTTGAAGCTGTCTTTAAAGATTCTGAAGAGCACCATGTGACAGAGAAGAAAGAAGAGCAGCCAACATCCATGAATGCGTTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGACACAGAGCAGGGGTTCAAAAGGGAAACAAGATTCACATCAAAATCACCTGCAGATGAGATAATCAACAAGATTGAGGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGAAAAGGAAACCTTAATGTTGCCACTGAGGTATATGATTGTTATTTGGTGATGTGGAACACTATTTGTCACATTATTGTACAGAAACTTAAAAGTGCTCATCATAAACAGATATTTCAAGTGGCACCTTCTCTTCACATGGTTGAGGTACGGAAGGCAAAAGGAGACACATTGGAGTTCCACAAGTTCTACAAGAAGCTTTCAACAAGCCTGGATGATGTTGTTTGGAAAACAGAAGATGATATGCAAATGAGAGAAACAAATTGA 1407 0.4144 MSQPKIKRRVGIYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIRREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMNLYKKISAAEFTCPPWLSFSARKLITRILDPDPTTRITIPEILDDEWFKKDYKPPVFEENGEINLDDVEAVFKDSEEHHVTEKKEEQPTSMNAFELISMSKGLNLENLFDTEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATEVYDCYLVMWNTICHIIVQKLKSAHHKQIFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLDDVVWKTEDDMQMRETN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02564 468 CDD CIPK_C 312 448 - -
Viun8g02564 468 SUPERFAMILY Protein kinase-like (PK-like) 11 286 IPR011009 -
Viun8g02564 468 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02564 468 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Viun8g02564 468 CDD STKc_SnRK3 13 267 - -
Viun8g02564 468 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Viun8g02564 468 Gene3D Kinase associated domain 1, KA1 305 457 - -
Viun8g02564 468 FunFam Non-specific serine/threonine protein kinase 306 398 - -
Viun8g02564 468 Pfam NAF domain 308 367 IPR004041 GO:0007165
Viun8g02564 468 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Viun8g02564 468 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Viun8g02564 468 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Viun8g02564 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Viun8g02564 468 FunFam Non-specific serine/threonine protein kinase 6 309 - -
Viun8g02564 468 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 446 - -
Viun8g02564 468 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02564 468 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02564 Viun-Chr8 34945308 34951724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02564 5 396 CBL-interacting serine-threonine protein kinases AT2G26980 84.184 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun8g02564 Pkinase 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02564 - - gmx:100794566 865.144