Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02549 ATGTCTTCTTCCGGGACAAATGGAACTGAGGATGCCTTGCCTCCGCCACCACCTGCTATCCCATCAGATGTAGTGCCTATCAAACTGGAGCCGGACAAGAAAAAGGTTTTGAGGCTTCCAATGGCGAGGCGTGGCGTTGCTTCTAAAGGGAATAAGTTGCGGCTTCTCACCAATCACTTCAGAGTGAATGTTGGAAACACTGACGGTCACTTTTTTCAGTATAGTGTATCTCTTTCTTATGAAGATGGACGCCCTGTAGAGGGTAAGGGTGTGGGGAGAAAGGTCCTCGACAGGGTTCAGGAAACATATAATTCTGAACTGAACGGGAAGGATTTTGCATATGATGGCGAGAAAACTCTTTTTACCCTTGGCTCTCTTGCCCGTAATCGTCTTGAGTTTACTGTGGTTCTCGAGGATGTTGTCTCTACTGGCAGAAATAATGGAAATGCCAGTCCTGAAGGAAATGGAGAATTTAGTGAGAGCGACAAGAAGAGGATGAGGCGCCCAAATAGAGCCAAAACTTTTAAAGTTGAGATAAATTTTGCTTCAAAGATTCCACTACAAGCCATTGTCAATGCTCTGCGTGGACAGGATTCTGATAATTATCAGGAAGCAATAAGAGTTCTTGATATCATTCTGAGGCAGCATGCTGCTAAACAGGGCTGTTTGCTTGTGCGCCAATCATTCTTCCACAATGATCCCAAGAATTTTGCTGATGTAGGAGGAGGTGTGCTTGGCTGCCGTGGATTTCATTCTAGTTTTAGAACCACGCAGAGTGGCTTGTCCCTTAACATAGATGTCTCAACTACAATGATTGTTACCCCTGGGCCTGTGGTGGACTTCCTCATTGCCAATCAGAATGTGAAAGATCCGTTTTCTCTTGACTGGGTGAAGGCCAAGAGAACGCTGAAAAATTTAAGGATTAAAGCAAGTCCATCCAACCAAGAGTATAAAATTACTGGGCTCAGTGACCTCCCATGCAAAGACCAACTGTTTACCTTAAAGAAAAAGGGTGGGGTGGATGGTGATGATACTGAGGAGGTGACTGTGTTTGATTATTTTGTTAATCGTCGGAACATAGATCTCCGCTACTCAGGTGATCTACCATGTATTAATGTTGGAAAGCCCAAGCGGCCAACATATATTCCCCTTGAGCTTTGCTCTTTGGTATCCCTTCAACGTTATACTAAAGCTCTAACCACACTACAAAGATCCTCTTTGGTGGAGAAGTCCAGGCAGAAGCCGCCAGAGAGGATGAGAGTGTTGACAGATGCTTTGAGTCGAAGCAATTATGGTTCTGAACCTATGCTTCGTAATTGTGGTATTTCTATCAACTCTGGCTTTACTGAAGTTGAAGGTCGTGTTTTACAAGCTCCAAGGTTAAAGTTTGGAAATGGGGAGGATTTCAATCCCCGAAATGGGAGGTGGAACTTCAATCAAAAGAAATTAGTAAGGCCTGTAAAAATTGATAAATGGGCTGTGGTTAACTTTTCTGCCCGATGTGATGTACGAGGACTTGTTAGGGATCTCCTCAAGTGCGGTCAAATGAAAGGAATTGCGATTGAGCAACCTTTTGATGTATTTGAAGAAGATTTTCGCAATAAACGATCCCCACCTCTGGTTAGAGTGGAGAAAATGCTTGAGTTCGTGCAGTCTAAACTTCCAGGGGCTCCACAATTTCTCCTTTGTCTTCTTCCTGATAGGAAAAATTCTGAACTCTATGGTCCGTGGAAGAAGAGGAATCTTGCTGATTTCGGGGTTGTTACACAGTGTATAGCGCCTCAAAGGGTCAATGATCAGTATTTAACCAATGTTCTACTGAAGATCAATGCCAAGCTTGGTGGCTTGAATTCTATTTTAGGAGCTGAACATGCTCCTTCTATCCCAGTTGTTTCGAGAGCTCCCACCATCGTTATTGGCATGGACGTGTCTCATGGCTCCCCAGGGCAGACCGACATTCCATCAATTGCAGCGGTGGTTAGCTCTCTGGAGTGGCCTCTAATATCAAAGTATAGAGCATGTGTCCGAACCCAGTCTCCTAAGGTCGAAATGATTGACAATTTGTTTAAGAAAGTCTCTGATGGTGTGGATGAAGGCATAATTAGGGAGTTACTTGTTGACTTCTATAGAAGTTCTGGGAATAGAAAGCCTGACAATATAATAATCTTCAGGGATGGTGTCAGTGAGTCCCAGTTCAATCAAGTTTTAAACATCGAGCTTGATCAGATTATTGAGGCTTGCAAGTTTTTAGATGAGAAGTGGAATCCCAAATTTTTGGTTATTGTGGCTCAAAAGAACCACCATACTAAGTTCTTTCAAGCAGATGCTCCCGACAATGTTCCTCCTGGAACCGTAATTGATAACAAAATTTGTCATCCTCGGAACTATGATTTTTACATGTGTGCACATGCTGGAATGATTGGTACTAGTAGGCCTACTCATTATCATGTACTGTTAGATGAGATTGGGTTTTCAGCTGATGATCTGCAGGAGCTTGTGCACTCATTGTCATACGTGTATCAGAGGAGCACCACTGCCATATCTGTTGTTGCTCCAATATGTTATGCTCACTTGGCTGCTACTCAGATGGGGCAGTTTATGAAATTTGAGGAAAGATCGGAGACAGCTTCTAGTCATAGTGGAGCTCACCCTGTCCCTCAATTGCCTAGGTTGAATGATAATGTCTCTAGCTCTATGTTCTTCTGCTGA 2709 0.4348 MSSSGTNGTEDALPPPPPAIPSDVVPIKLEPDKKKVLRLPMARRGVASKGNKLRLLTNHFRVNVGNTDGHFFQYSVSLSYEDGRPVEGKGVGRKVLDRVQETYNSELNGKDFAYDGEKTLFTLGSLARNRLEFTVVLEDVVSTGRNNGNASPEGNGEFSESDKKRMRRPNRAKTFKVEINFASKIPLQAIVNALRGQDSDNYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIVTPGPVVDFLIANQNVKDPFSLDWVKAKRTLKNLRIKASPSNQEYKITGLSDLPCKDQLFTLKKKGGVDGDDTEEVTVFDYFVNRRNIDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYTKALTTLQRSSLVEKSRQKPPERMRVLTDALSRSNYGSEPMLRNCGISINSGFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNQKKLVRPVKIDKWAVVNFSARCDVRGLVRDLLKCGQMKGIAIEQPFDVFEEDFRNKRSPPLVRVEKMLEFVQSKLPGAPQFLLCLLPDRKNSELYGPWKKRNLADFGVVTQCIAPQRVNDQYLTNVLLKINAKLGGLNSILGAEHAPSIPVVSRAPTIVIGMDVSHGSPGQTDIPSIAAVVSSLEWPLISKYRACVRTQSPKVEMIDNLFKKVSDGVDEGIIRELLVDFYRSSGNRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQADAPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEERSETASSHSGAHPVPQLPRLNDNVSSSMFFC 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02549 902 SMART DUF1785_2 223 275 IPR014811 -
Viun8g02549 902 Gene3D - 627 902 IPR036397 GO:0003676
Viun8g02549 902 Gene3D paz domain 269 395 - -
Viun8g02549 902 Pfam PAZ domain 279 407 IPR003100 GO:0005515
Viun8g02549 902 Pfam Argonaute linker 1 domain 225 272 IPR014811 -
Viun8g02549 902 SUPERFAMILY Ribonuclease H-like 544 866 IPR012337 -
Viun8g02549 902 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Viun8g02549 902 Pfam N-terminal domain of argonaute 52 213 IPR032474 -
Viun8g02549 902 Gene3D - 455 621 - -
Viun8g02549 902 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Viun8g02549 902 FunFam Protein argonaute 7 270 395 - -
Viun8g02549 902 SUPERFAMILY PAZ domain 270 431 IPR036085 GO:0005515
Viun8g02549 902 FunFam Protein argonaute 3 628 902 - -
Viun8g02549 902 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 47 870 - -
Viun8g02549 902 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Viun8g02549 902 MobiDBLite consensus disorder prediction 1 25 - -
Viun8g02549 902 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Viun8g02549 902 CDD PAZ_argonaute_like 275 390 - -
Viun8g02549 902 ProSiteProfiles PAZ domain profile. 295 391 IPR003100 GO:0005515
Viun8g02549 902 MobiDBLite consensus disorder prediction 144 168 - -
Viun8g02549 902 CDD Piwi_ago-like 435 862 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02549 Viun-Chr8 34878925 34886083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02549 43 902 Eukaryotic Initiation Factors Gene Family AT5G43810 35.171 2.52e-163 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02549 K11593 - gmx:100779439 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02549 8 34878925 34886083 Viun8g02549 8 34878925 34886083 ECH