Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02543 ATGCTGGCTATCTGGTTGATGCTATTGTTGTTGGTGGCCATTGCATTGGGGAATTCAGATATTGATGCTCTCCTTGAATTTAAGAAAAGCATTCAGAATGACCCTTCTGGATTAGTTTTTAGTTCCTGGAATCCCAAGTCTTTAGATTCTGATGGATGTCCAAGGAACTGGTATGGAATATGGTGCAGTAAAGGCAGTGTTATATCAATCACTCTGGACAATGCTGGTTTGGTTGGTGACTTTAATTTCCATGCAATTAGTGGCCTTGCAATGCTTCGCAATTTGTCAGCTGTGAACAACCACTTCACTGGAGAACTCTCACATGCTACTACAATGGAATCACTTGAATATCTTGATTTGTCCCTCAACAAGTTTAATGGACCGTTACTCTCTAACTTTGTTCAGTTGCGGAAGTTAGTGTATCTGAATCTTTCTTCTAATGAACTTGGAGGCACTCTTACTATAGAGTTTCACAAACTTGGGAAGTTGAAGTATGTAGATTTGCACATGAATAACTTTTCTGGGGATATTATGCATATCTTTTATCAGATGGGAAGTGTACTATATATTGACTTAAGCAGCAACAGGTTCTCTGGTGCACTGGACTTGGGACTTGCGGATGAATCTTTTCTCTCCTCAATTCAATATTTAAATGTTAGCCATAATTCCTTGAGTGGTGAGTTATTTGCTCATGATGGTATGCCATACCTTGACAATTTAGAGGTTTTTGATGCTAGTAATAATCAGTTAGAGGGTAATATACCTTCCTTTACTTTTGTGGTATCTCTTCGGATACTTCGACTTGCATTCAACCAGCTCACTGGTTTGCTGCCAGAAGCTCTATTGAAGGAAAGTTCAATGATGTTATCCGAACTGGATCTTAGTCAAAACAAGCTTCAAGGTCCCATTGGAATTATTACCTCGGTGACTCTGAGGAAGCTTAATTTATCTTCAAACAAGTTGTCTGGCCCCTTACCTCACAGGGTAGGCCACTGTGCTGTCATAGATTTTAGTAATAACACACTATCAGGTAATTTCTCAAGGATTGGATATTGGGGTAACTATGTGGAAGTTGTTCAGTTAAGTACCAACACATTAATTGGAATGCTTGCAAACGAAACTTCTCAGTTTTTAAGGTTAACTGAACTTAAGGCATCCAATAACTTGTTAGAGGGCTTTCTCCCACCAATTTTGGGAACATTTCCAGAACTGAAGGAGATTGATCTTAGCCTCAACCAGCTTTCTGGGTTCCTCCTACCAAGCTTTTTTTACTCAACCAAATTGATTAATCTTAATCTCTCCAACAACAAGTTTTCTGGATCAATTCCTATTCAATTTCAACCTCCAAATACTCCATTGGTTTCTACTGAAAATATTAGTCTGGTGTTTCTTGATCTTTCAAACAACAACTTGAGTGGGCCTCTTCCTTCAAATATGAGTAGGCTTCACAATTTGGTATATCTCAATTTATGCAACAACAAATTGGATGGTAATATTCCTGATGACCTTCCAGATGAGTTGAGAGCATTAAATGTGTCCTTCAATAATTTTTCTGGTGTGGTACCTGAAAACTTAAAGCATTTTCCTGAATCAGCATTTCATCCAGGAAATACTATGCTGGTGTTTCCTCATTCGCAATCATCACCAAAAGATGCTTCCAACCTAGGTTTGAGGGAACATCGGTTACATAGAAGGTCTGCCACTAGGATTGTCCTGATTGCATGTTTGGTTGCCGGTGCTTTTGTGATGGCTTTTGTGGGCATAATAATTTACTATAAGGTTCATCATGAAAAAGAAAGGACTTCAAAACAAAATGAAGCTAGAGGTATCACTCAAGAGGGTAATTTCACATCAAATATAGAGGCAGTTTACAGAAATTTGGAAGCATTACCACCATCTCAAAGGGGCTCTTCTGATGCTGCAAGAAACATTCATCCAGTGGGAGAGAATCCTATGAGTCTTGGCCGTAGTGAATTAGGTAAAACCGAGGAAGGAATGTATTCCCCAATGTCTATTTTGTCACCTTCAAATCCTTCATCTTCTAAAAGCCACCAGTTTGAGAATCCTGGTTCCCTCCAAGTATCATCTCCAGATAAACTGGTTGGAGACTTGCATATATTTGATGGGTCCTTGGTACTAACTGCGGAAGAACTTTCATGTGCTCCAGCAGAAGTTATTGGCAGGAGCTGTCATGGTACACTTTACAAAGCAACACTTGACTCTGGTCATGCATTGGCTGTCAAATGGCTAAGAGAAGGAATAACCAAAGGAAAAAAGGATTTGGCTCGGGAAATAAAGAAACTTGGGACCATCAAGCATCCAAACCTGGTTTCTGTTCAGGGTTACTATCTGGGACCAAAGGAACATGAGAAACTCATCATATCAAATTTCATGAATGCACAATCTCTTGACATTTATCTCCATGAAGTAGATAAAACAAATCTCCATCCTTTAACTCTAGATGAAAGGCTGAGAGTGGCTATAGAGGTGGCACTATGTCTACATTTCTTACATGATGAGAAAGCCATACCTCATGGCAATCTCAAATCCACAAACATTTTGCTAGAAACTCCCAACAAAAATGTTCTCCTCACAGACTACAGCCTGCACAGGATACTCACTGCTGCAGGTACTACCGAGCAAGTTCTGAATGCCGGTGCACTCGGCTACCGGCCGCCGGAGTTTGCTAGGTCAAGCAAGCCATGCCCTTCCTTGACAAGTGATGTGTATGCATTTGGAGTGGTCTTGTTAGAGCTCATAACAGGAAGAAATTCTGGAGAAATAGTATCTGGGATTCCAGGGGTGGTTGACCTCACTGATTGGGTGAGGTTTTTGGCTGAACAAGACCGTTCAAGCCAGTGCTTTGATAGGTTTCTAGTGGAGAAGCATAATGGGGAAAAACACTCAAAAATTCTTGATGAAATGCTAAAGGTGGCTCTTAGATGCATCCTTCCAGCATCTGATAGACCTGACATGAAAACTGTCTCTGATGATCTATCAGCAATAATAAGCATTCAACAACAGGCATTATAA 3033 0.4016 MLAIWLMLLLLVAIALGNSDIDALLEFKKSIQNDPSGLVFSSWNPKSLDSDGCPRNWYGIWCSKGSVISITLDNAGLVGDFNFHAISGLAMLRNLSAVNNHFTGELSHATTMESLEYLDLSLNKFNGPLLSNFVQLRKLVYLNLSSNELGGTLTIEFHKLGKLKYVDLHMNNFSGDIMHIFYQMGSVLYIDLSSNRFSGALDLGLADESFLSSIQYLNVSHNSLSGELFAHDGMPYLDNLEVFDASNNQLEGNIPSFTFVVSLRILRLAFNQLTGLLPEALLKESSMMLSELDLSQNKLQGPIGIITSVTLRKLNLSSNKLSGPLPHRVGHCAVIDFSNNTLSGNFSRIGYWGNYVEVVQLSTNTLIGMLANETSQFLRLTELKASNNLLEGFLPPILGTFPELKEIDLSLNQLSGFLLPSFFYSTKLINLNLSNNKFSGSIPIQFQPPNTPLVSTENISLVFLDLSNNNLSGPLPSNMSRLHNLVYLNLCNNKLDGNIPDDLPDELRALNVSFNNFSGVVPENLKHFPESAFHPGNTMLVFPHSQSSPKDASNLGLREHRLHRRSATRIVLIACLVAGAFVMAFVGIIIYYKVHHEKERTSKQNEARGITQEGNFTSNIEAVYRNLEALPPSQRGSSDAARNIHPVGENPMSLGRSELGKTEEGMYSPMSILSPSNPSSSKSHQFENPGSLQVSSPDKLVGDLHIFDGSLVLTAEELSCAPAEVIGRSCHGTLYKATLDSGHALAVKWLREGITKGKKDLAREIKKLGTIKHPNLVSVQGYYLGPKEHEKLIISNFMNAQSLDIYLHEVDKTNLHPLTLDERLRVAIEVALCLHFLHDEKAIPHGNLKSTNILLETPNKNVLLTDYSLHRILTAAGTTEQVLNAGALGYRPPEFARSSKPCPSLTSDVYAFGVVLLELITGRNSGEIVSGIPGVVDLTDWVRFLAEQDRSSQCFDRFLVEKHNGEKHSKILDEMLKVALRCILPASDRPDMKTVSDDLSAIISIQQQAL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02543 1010 Gene3D Ribonuclease Inhibitor 182 353 IPR032675 -
Viun8g02543 1010 Pfam Protein tyrosine and serine/threonine kinase 724 997 IPR001245 GO:0004672|GO:0006468
Viun8g02543 1010 SMART LRR_typ_2 401 425 IPR003591 -
Viun8g02543 1010 SMART LRR_typ_2 136 159 IPR003591 -
Viun8g02543 1010 SMART LRR_typ_2 260 283 IPR003591 -
Viun8g02543 1010 SMART LRR_typ_2 211 231 IPR003591 -
Viun8g02543 1010 SMART LRR_typ_2 482 506 IPR003591 -
Viun8g02543 1010 Gene3D Transferase(Phosphotransferase) domain 1 798 1009 - -
Viun8g02543 1010 MobiDBLite consensus disorder prediction 631 657 - -
Viun8g02543 1010 Gene3D Ribonuclease Inhibitor 354 449 IPR032675 -
Viun8g02543 1010 Gene3D Phosphorylase Kinase; domain 1 719 797 - -
Viun8g02543 1010 SUPERFAMILY Protein kinase-like (PK-like) 723 999 IPR011009 -
Viun8g02543 1010 FunFam Leucine-rich repeat receptor-like protein kinase 705 797 - -
Viun8g02543 1010 PANTHER OS07G0626500 PROTEIN 5 100 - -
Viun8g02543 1010 SUPERFAMILY L domain-like 19 301 - -
Viun8g02543 1010 Pfam Leucine rich repeat N-terminal domain 18 63 IPR013210 -
Viun8g02543 1010 ProSiteProfiles Protein kinase domain profile. 720 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02543 1010 Gene3D Ribonuclease Inhibitor 450 548 IPR032675 -
Viun8g02543 1010 Gene3D Ribonuclease Inhibitor 17 181 IPR032675 -
Viun8g02543 1010 SUPERFAMILY RNI-like 310 529 - -
Viun8g02543 1010 MobiDBLite consensus disorder prediction 674 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02543 Viun-Chr8 34811114 34815585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02543 330 529 Receptor kinase-like Gene Family AT3G51740 33.333 5.77e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun8g02543 PK_Tyr_Ser-Thr 4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02543 - - gmx:100781394 1703.34