Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02536 ATGGCAGGTAATGTACCAACTGCAACTGAAGGACGCCCCTTGAAATGTAAAGCTGCAATTTGCCGCAAGCCTGGCTCTCCACTGACTATTGAGGAGATCACTGTAGCACCTCCATTGCCTCGTGAAGCTAGGATTCGTGTTATATGCACTTCTCTCTGTCACACCGATGTTACCTTTTGGAATATGCAGGACCCTTCTCCAAGAATCTTGGGTCATGAGGCTTTTGGGGTTGTGGAAAGTGTTGGAGAGGGTGTAACTGAACTTACAAAAGGAGATTTGGTTGTCCCAATTTTCTTAGCTGATTGTGGGGAATGTGGAGATTGCAAATCAAGCAGGAGCAATCTTTGTTTAAAATTTCCTTTTCAGTTCTCTCCTTGGATGCCTAGAGATGGCACATCAAGATTCAAGGATTCAAAAGGAGAGATCCTACAGCATTTCATGTCTGTTTCTAGTTTTAGTGAGTACACTGTGATTGACGTTGCTCATCTAACAAAGGTTGATCTACCAATACCACCAAAGCTGGCATGCCTACTTGGCTGTGGTATATCAACTGGAGTAGGTGCTGCTTGGAAATCTGCAGGTGTGGAGCCAGGTTCTTCAGTTGCCATTTTTGGGCTGGGAAGTATTGGATTAGCTGTTGCTGAGGGAGCTAGACTTTGTGGAGCAGCTAAGATTATAGGTGTGGATATCAACCCAGAGAAATATGAAGTTGGGAAAAAATTTGGAGTCACTCACTTTGTCCATTCTGGAGAAAATAAAGACAAAACTGTGAGCCAGATTATCATGGAAATGACTGATGGAGGAGCAGACTATTGTTTCGAATGTGTTGGCAAGGCATCACTGATGGAAGATGCATATGCTTCTAGTAGAAGGGGTTGGGGAAAAACAGTGGTTGTAGGATTGGACAAGCCAGGATCCAGGTTGAGCCTTGACACTGGTGAGGTACTGCTTAGTCAGAAGACCCTAAGGGGATGCTTATTTGGAGGACTTAAACCTAAGACTGATGTACCTACTCTCATAAAACGCTACATAGATAAGGAACTGAATCTGGAGGAGTTTGTCACACATGAGGTGCAGTTTAAGGATATCAACAAAGCTTTTGATTTGTTGAATGAAGGAAAGAGTCTCCGATGTGTGATTTGGATGGACGAGTGA 1155 0.4372 MAGNVPTATEGRPLKCKAAICRKPGSPLTIEEITVAPPLPREARIRVICTSLCHTDVTFWNMQDPSPRILGHEAFGVVESVGEGVTELTKGDLVVPIFLADCGECGDCKSSRSNLCLKFPFQFSPWMPRDGTSRFKDSKGEILQHFMSVSSFSEYTVIDVAHLTKVDLPIPPKLACLLGCGISTGVGAAWKSAGVEPGSSVAIFGLGSIGLAVAEGARLCGAAKIIGVDINPEKYEVGKKFGVTHFVHSGENKDKTVSQIIMEMTDGGADYCFECVGKASLMEDAYASSRRGWGKTVVVGLDKPGSRLSLDTGEVLLSQKTLRGCLFGGLKPKTDVPTLIKRYIDKELNLEEFVTHEVQFKDINKAFDLLNEGKSLRCVIWMDE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02536 384 Pfam Alcohol dehydrogenase GroES-like domain 41 165 IPR013154 -
Viun8g02536 384 PANTHER ALCOHOL DEHYDROGENASE 12 380 - -
Viun8g02536 384 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Viun8g02536 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 345 IPR036291 -
Viun8g02536 384 FunFam S-(hydroxymethyl)glutathione dehydrogenase 185 325 - -
Viun8g02536 384 SUPERFAMILY GroES-like 333 381 IPR011032 -
Viun8g02536 384 Pfam Zinc-binding dehydrogenase 209 340 IPR013149 -
Viun8g02536 384 Gene3D - 185 325 - -
Viun8g02536 384 SUPERFAMILY GroES-like 9 191 IPR011032 -
Viun8g02536 384 FunFam Alcohol dehydrogenase 6 19 196 - -
Viun8g02536 384 Gene3D - 19 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02536 Viun-Chr8 34767155 34770528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02536 48 370 Monolignol Biosynthesis Gene Families AT2G21730 25.000 3.67e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02536 K00121 - gmx:100806887 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02536 8 34767155 34770528 Viun8g02536 8 34767155 34770528 ECH