Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02517 ATGTCAGATGACATGCTCATTCATTTCTCGTCCAACTCTTCAAACCAATCTGATCATTCTCTGCCTACAAAGATTGCAAAGTTGGAAGCTCGTATGGTTGGTAAGGGTTCCTCAACCTCTTCTCAGCAACCAGGTTGGTCCTCTGTGTCTGTTCCTTCAGCTGGGAAATTTGGTCGAGCTGTTGAAAATTCGGCTGAAGCATCCACTTCAAGTGATTCTGATGATGATAATGGTGGGGCATTCTTGATACAAGCCAACACATCGAAGCGACAAAAAGTTCAAGAAGATGGCAACACTAGTGTTTTTGAAAGCGTTGAGGTTGTTACTGATGGAAAGCAAACTAGTTTGGATGCCGTGGAGACAAAAATGCACATTGAAATGAATAGAAAGAAACATGGTCGTGGAAGAGGGAGTTCTGGTTCGGGTAGAGGCCGGGGTTCCAGAGTTAATGATCAGACCAAAACACTAATTTCTTCTCCAACTGCTTTGGCTTCAAATGGTCAGATCGACAATGTATACCATAAAGATGAGGTTGCATCTTTGCAAGCTAAAGTTGTTGCTCTGGAGGAGGAATTGCGGAAATCAAAGCAAGAAGCAGTTGATTATCAGAATCTTACTCAACAATTAGAAAAGGAACTGAAGGAGATGACTGATCATGAACAACAAATGAAGCCTAAGAGAATGAAAGTAATATCTGACTTGTTGATATCCGTATCAAAGGCCGAAAGACAAGAAGCAAGGCTGAAAGTACGGCAAGATTCATTGAGACTTGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCTGAGACCTGGGAAGATGGTCAAGCTTTAAAGGATCTGAATGCCCAGCTTAAACAACTAGTAGAAACAAAGGAGGCAATAGAACGACAGCGCAAATTGTTTAAGAAAAAGCAATCTGATAAGGGTGATGGTACTGATGCAGAGGCTGCATTGCCAGAAGATATTCTAATTCACGATGAAATTTACAAATGTCGATTAGCTAGCCTTAAAAGAGAAGAGGAAATTGTTTTACGAGAGAGGGATCGGTATGAAATAGAGAAGGGGAGGTTAATTCGTGAGATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCCCTTCTTAACCTTCTTGGGAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTCGATTTGGTGGACCATAGATATGTTGCTTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGCTACATACGACATGCAATTCGAGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTGTGGGACATCTTTGAGATTGATCAAAACACATTCTGCACCGTTCTAGAGTATTGCAGTGGGAAGGATCTTGATGCTGTTCTTAAAGCAACGCCTATATTATCTGAGAGGGAGGCTAAGGTCATCATAGTTCAGATTTTTCAAGGTCTTGTTTACATGAATAAAAGAACACAGAAGATTATCCATTATGATTTGAAGCCTGGAAATGTTCTTTTTGATGAACTTGGTGTTGCCAAAGTTACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTTGGATCCCAAGGTATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTACTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTATTATCAAATGCTTTTTGGCCGACGACCTTTCGGGCATCATCAAACTCAAGAGAGAATACTTCGTGAGGACACAATTATTAAGGCTCGAAAGGTTGACTTTCCTTCTAAACCTACCATTTCTAACGAGGCAAAGGATTTTATCCGACGGTGTCTAACATATAACCAGGCTGAGAGACCAGATGTGTTGACCATTGCTCAAGACCCATATCTCACTTTCTCAAAGAAGTAA 1989 0.4098 MSDDMLIHFSSNSSNQSDHSLPTKIAKLEARMVGKGSSTSSQQPGWSSVSVPSAGKFGRAVENSAEASTSSDSDDDNGGAFLIQANTSKRQKVQEDGNTSVFESVEVVTDGKQTSLDAVETKMHIEMNRKKHGRGRGSSGSGRGRGSRVNDQTKTLISSPTALASNGQIDNVYHKDEVASLQAKVVALEEELRKSKQEAVDYQNLTQQLEKELKEMTDHEQQMKPKRMKVISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLVETKEAIERQRKLFKKKQSDKGDGTDAEAALPEDILIHDEIYKCRLASLKREEEIVLRERDRYEIEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPILSEREAKVIIVQIFQGLVYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILYYQMLFGRRPFGHHQTQERILREDTIIKARKVDFPSKPTISNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTFSKK 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02517 662 PANTHER MIXED LINEAGE PROTEIN KINASE 10 659 - -
Viun8g02517 662 MobiDBLite consensus disorder prediction 34 50 - -
Viun8g02517 662 ProSiteProfiles Protein kinase domain profile. 384 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02517 662 Coils Coil 279 306 - -
Viun8g02517 662 FunFam Serine/threonine-protein kinase TOUSLED 375 662 - -
Viun8g02517 662 SUPERFAMILY Protein kinase-like (PK-like) 376 658 IPR011009 -
Viun8g02517 662 MobiDBLite consensus disorder prediction 126 151 - -
Viun8g02517 662 Coils Coil 171 222 - -
Viun8g02517 662 Gene3D Transferase(Phosphotransferase) domain 1 375 662 - -
Viun8g02517 662 MobiDBLite consensus disorder prediction 63 80 - -
Viun8g02517 662 Pfam Protein kinase domain 385 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02517 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Viun8g02517 662 SMART serkin_6 384 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02517 662 MobiDBLite consensus disorder prediction 1 22 - -
Viun8g02517 662 CDD STKc_TLK 383 656 - -
Viun8g02517 662 Coils Coil 335 369 - -
Viun8g02517 662 ProSitePatterns Protein kinases ATP-binding region signature. 390 413 IPR017441 GO:0005524
Viun8g02517 662 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02517 Viun-Chr8 34656609 34664987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02517 367 662 MAP Kinase Kinase Kinase AT3G13530 28.000 4.03e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Viun8g02517 Pkinase 2.2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02517 K08864 - gmx:100805168 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02517 8 34656609 34664987 Viun8g02517 8 34656609 34664987 ECH