LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g02516	ATGTCAGATGACATGCTCATTCATTTCTCGTCCAACTCTTCAAACCAATCTGATCATTCTCTGCCTACAAAGATTGCAAAGTTGGAAGCTCGTATGGTTGGTAAGGGTTCCTCAACCTCTTCTCAGCAACCAGGTTGGTCCTCTGTGTCTGTTCCTTCAGCTGGGAAATTTGGTCGAGCTGTTGAAAATTCGGCTGAAGCATCCACTTCAAGTGATTCTGATGATGATAATGGTGGGGCATTCTTGATACAAGCCAACACATCGAAGCGACAAAAAGTTCAAGAAGATGGCAACACTAGTGTTTTTGAAAGCGTTGAGGTTGTTACTGATGGAAAGCAAACTAGTTTGGATGCCGTGGAGACAAAAATGCACATTGAAATGAATAGAAAGAAACATGGTCGTGGAAGAGGGAGTTCTGGTTCGGGTAGAGGCCGGGGTTCCAGAGTTAATGATCAGACCAAAACACTAATTTCTTCTCCAACTGCTTTGGCTTCAAATGGTCAGATCGACAATGTATACCATAAAGGTGGCAAACCCAGTTATCAGTTTCATAGTGATAATTGTGTTTCATTAGAGGATGAGGTTGCATCTTTGCAAGCTAAAGTTGTTGCTCTGGAGGAGGAATTGCGGAAATCAAAGCAAGAAGCAGTTGATTATCAGAATCTTACTCAACAATTAGAAAAGGAACTGAAGGAGATGACTGATCATGAACAACAAATGAAGCCTAAGAGAATGAAAGTAATATCTGACTTGTTGATATCCGTATCAAAGGCCGAAAGACAAGAAGCAAGGCTGAAAGTACGGCAAGATTCATTGAGACTTGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCATATCTGAGACCTGGGAAGATGGTCAAGCTTTAAAGGATCTGAATGCCCAGCTTAAACAACTAGTAGAAACAAAGGAGGCAATAGAACGACAGCGCAAATTGTTTAAGAAAAAGCAATCTGATAAGGGTGATGGTACTGATGCAGAGGCTGCATTGCCAGAAGATATTCTAATTCACGATGAAATTTACAAATGTCGATTAGCTAGCCTTAAAAGAGAAGAGGAAATTGTTTTACGAGAGAGGGATCGGTATGAAATAGAGAAGGGGAGGTTAATTCGTGAGATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCCCTTCTTAACCTTCTTGGGAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTCGATTTGGTGGACCATAGATATGTTGCTTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGCTACATACGACATGCAATTCGAGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTGTGGGACATCTTTGAGATTGATCAAAACACATTCTGCACCGTTCTAGAGTATTGCAGTGGGAAGGATCTTGATGCTGTTCTTAAAGCAACGCCTATATTATCTGAGAGGGAGGCTAAGGTCATCATAGTTCAGATTTTTCAAGGTCTTGTTTACATGAATAAAAGAACACAGAAGATTATCCATTATGATTTGAAGCCTGGAAATGTTCTTTTTGATGAACTTGGTGTTGCCAAAGTTACTGATTTTGGTCTTAGTAAGATAGTGGAGGATGATGTTGGATCCCAAGGTATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTACTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTTTGTATTATCAAATGCTTTTTGGCCGACGACCTTTCGGGCATCATCAAACTCAAGAGAGAATACTTCGTGAGGACACAATTATTAAGGCTCGAAAGGTTGACTTTCCTTCTAAACCTACCATTTCTAACGAGGCAAAGGATTTTATCCGACGGTGTCTAACATATAACCAGGCTGAGAGACCAGATGTGTTGACCATTGCTCAAGACCCATATCTCACTTTCTCAAAGAAGTAA	2040	0.4088	MSDDMLIHFSSNSSNQSDHSLPTKIAKLEARMVGKGSSTSSQQPGWSSVSVPSAGKFGRAVENSAEASTSSDSDDDNGGAFLIQANTSKRQKVQEDGNTSVFESVEVVTDGKQTSLDAVETKMHIEMNRKKHGRGRGSSGSGRGRGSRVNDQTKTLISSPTALASNGQIDNVYHKGGKPSYQFHSDNCVSLEDEVASLQAKVVALEEELRKSKQEAVDYQNLTQQLEKELKEMTDHEQQMKPKRMKVISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLKQLVETKEAIERQRKLFKKKQSDKGDGTDAEAALPEDILIHDEIYKCRLASLKREEEIVLRERDRYEIEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPILSEREAKVIIVQIFQGLVYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILYYQMLFGRRPFGHHQTQERILREDTIIKARKVDFPSKPTISNEAKDFIRRCLTYNQAERPDVLTIAQDPYLTFSKK	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g02516	679	Pfam	Protein kinase domain	402	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02516	679	MobiDBLite	consensus disorder prediction	34	50	-	-
	Viun8g02516	679	FunFam	Serine/threonine-protein kinase TOUSLED	392	679	-	-
	Viun8g02516	679	MobiDBLite	consensus disorder prediction	127	151	-	-
	Viun8g02516	679	SUPERFAMILY	Protein kinase-like (PK-like)	393	675	IPR011009	-
	Viun8g02516	679	CDD	STKc_TLK	400	673	-	-
	Viun8g02516	679	ProSitePatterns	Protein kinases ATP-binding region signature.	407	430	IPR017441	GO:0005524
	Viun8g02516	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	527	539	IPR008271	GO:0004672\|GO:0006468
	Viun8g02516	679	Coils	Coil	181	239	-	-
	Viun8g02516	679	MobiDBLite	consensus disorder prediction	63	80	-	-
	Viun8g02516	679	Coils	Coil	352	386	-	-
	Viun8g02516	679	SMART	serkin_6	401	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02516	679	Gene3D	Transferase(Phosphotransferase) domain 1	392	679	-	-
	Viun8g02516	679	MobiDBLite	consensus disorder prediction	1	22	-	-
	Viun8g02516	679	ProSiteProfiles	Protein kinase domain profile.	401	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02516	679	MobiDBLite	consensus disorder prediction	1	80	-	-
	Viun8g02516	679	PANTHER	MIXED LINEAGE PROTEIN KINASE	10	676	-	-
	Viun8g02516	679	Coils	Coil	296	323	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g02516	Viun-Chr8	34656606	34664987	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g02516	384	679	MAP Kinase Kinase Kinase	AT3G13530	28.000	4.55e-28	119

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Viun8g02516		Pkinase	2.3e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g02516	K08864		-	gmx:100805168	1191.79