Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02501 ATGTTCCTTTTATTGATCACTAATCCAATGGAACTCAGAAAAGGGTTACTGCTGTTGTTTTTGTTGCTGGAGTACGTTTGTTGCAATGTTGAAGCAAAGTGTTTGAAGGGATGTAATGTAGCTTTAGGTTCCTATTATGTGAATACAGGGATGTCCTTGGATGTTATAACACCCTTGATGAAATCAAGCGTTGTGTCCAATTCTGACGATATAATAAGCTACAATAAAGACAAAATATTCAATAAAAATGTCTTCTACTTTGACAGAATCAATGTTCCATTTCCATGTGACTGTATCAGTGATGAGTTTCTGGGGCATGTGTTTGAGTACTCAGCTGCTGAAGGTGACACCTATGATTCGATTGCCAAAGTGGAATATGCCGATCTCACCACTGTTGAGCTTTTGAGGAGATTCAACAGTTATGGCCAAAATGGTATACCAAAAAATGCCAAGGTTAATGTCACGGTTAATTGTTCTTGTGGGAACAGCCAGGTTTCACAAGACTATGGTTTGTTTATTACATATCCACTCAGACCTGGCAATAATTTGCATGATATTGCCAACGAGGCTCATCTTGATGCACAGTTGCTGCAGAATTATAATCCTGGAGTCAATTTCAGCAAAGAGAGTGGGATTGTTTTCATTCCAGGAAGAGATCAATTTGGAGAGTATGTTCCCTTGCACCCTAGAAACACAGCAGGTCTAGCTAAGGGTGATGTTGCTGGAATATCCATAGCAGGAATATGCGGTCTTCTATTACTAGTAATCTGCATATATGTTAAATTCTTCAAGAAGAAGGAAGGAGAGAAACCTAAATTGCCAACAGAAAATTCTACGGCGTTTTCAACTCAAGATGCCTCTGGAAGTGCAGAATATGAAATTTCAGGATCCAGTGGGACTACTACAGCTGCTGGCCTTACAGGAATTATGGTGGCAAAATCGATGGAGTTCACTTATCAAGAACTAGCAAAGGCTACAAATAACTTCAGTTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTGTATTATGCAGAACTGAGAGGCGAGAAAACGGCAATTAAAAAGATGGACGTGCAAGCATCTACTGAATTTCTTTGTGAGTTGAAGGTCTTAACTCACGTTCATCACTTGAATCTGGTGCGTTTGATTGGATATTGCGTTGAAGGATCTCTTTTCCTTGTGTATGAACATATTGACAACGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGCCATGGTCTAGCCGAGTGCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACTGTGCCAGTGTATATCCATCGTGATGTAAAATCTGCAAATATATTAATAGACAAAAATTTCCGTGGAAAGGTAGCAGATTTTGGCTTGACTAAACTTATTGAAGTTGGAGGGTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAGTATGGTGACGTCTCTCCAAAAGTAGATGTGTACGCTTTTGGAGTGGTTCTGTATGAACTGATTTCTGCAAAGAATGCTGTTCTGAAAACAGGTGAATTTGTTGCTGAATCCAAGGGCCTTGTAGCTTTGTTTGAAGAAGCACTTAATCAGAGTAATCCTTCAGAAGCTATTCGCAAACTGGTGGATCCCAGGCTTGGAGAAAACTATCCAATTGATTCAGTTCTCAAGATTGCTCAACTTGGGAGAGCTTGTACAAGAGATAATCCACTACTACGCCCAAGTATGAGGTCTATAGTTGTTGCTCTTATGACACTTTCATCACCTACTGAGGATTTTGAGGATGAAACTGCTTCCTACGAAAATCAAACTCTCATAAATCTATTGTCTGTAAGGTGA 1887 0.3996 MFLLLITNPMELRKGLLLLFLLLEYVCCNVEAKCLKGCNVALGSYYVNTGMSLDVITPLMKSSVVSNSDDIISYNKDKIFNKNVFYFDRINVPFPCDCISDEFLGHVFEYSAAEGDTYDSIAKVEYADLTTVELLRRFNSYGQNGIPKNAKVNVTVNCSCGNSQVSQDYGLFITYPLRPGNNLHDIANEAHLDAQLLQNYNPGVNFSKESGIVFIPGRDQFGEYVPLHPRNTAGLAKGDVAGISIAGICGLLLLVICIYVKFFKKKEGEKPKLPTENSTAFSTQDASGSAEYEISGSSGTTTAAGLTGIMVAKSMEFTYQELAKATNNFSLENKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGTGKDPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLIEVGGSTLHTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKNAVLKTGEFVAESKGLVALFEEALNQSNPSEAIRKLVDPRLGENYPIDSVLKIAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDFEDETASYENQTLINLLSVR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02501 628 Gene3D Phosphorylase Kinase; domain 1 309 399 - -
Viun8g02501 628 Pfam Protein tyrosine and serine/threonine kinase 330 597 IPR001245 GO:0004672|GO:0006468
Viun8g02501 628 SMART serkin_6 329 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02501 628 Gene3D Transferase(Phosphotransferase) domain 1 400 623 - -
Viun8g02501 628 FunFam LysM receptor kinase 2 308 399 - -
Viun8g02501 628 FunFam PTI1-like tyrosine-protein kinase 3 400 613 - -
Viun8g02501 628 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 610 IPR044812 GO:0019199|GO:0045087
Viun8g02501 628 ProSiteProfiles Protein kinase domain profile. 329 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02501 628 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Viun8g02501 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Viun8g02501 628 SUPERFAMILY Protein kinase-like (PK-like) 311 599 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02501 Viun-Chr8 34539801 34544040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02501 10 628 Receptor kinase-like Gene Family AT3G21630 54.560 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun8g02501 PK_Tyr_Ser-Thr 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02501 - K13429 gmx:100776847 1014.99