Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02500 ATGGAGAACAGATTCAGATTCTCAATTTTCTTCATGCTATGGGCTTGTATGGTGCTCAGTGCAGAATCCGAGTGTAAGAGGGATTGTGATTTAGCTCTAGCTTCCTACTCTCTAACAGGAGGTGACCTGACATATGTATCAAAGCTTATGAAATCCGAGGTTCTTTCAAAACCTGAAGATATTCTTCCCTACAACAGTGAAACCATAAAAAACAAAGATCAGGTTCCAGCCTTTACCAGAGTGAACGTTCCATTCCCATGCGATTGCATTGGAGATTTTCTTGGTCATGTATTCCAATACGACGTTGTATCAGGTGACACTTACACCTCCATTGCCACGAATTATTCCGATTTGACCACTGCTCAGTTGTTGCAGAGCTTCAACACAAATTCACAAACCGGTGTTCCTGATACCGCCACTGTTAATGTCTTCGTTAACTGTTCCTGTGGGAACAGTGAAGTTTCCAAGGCTTATGGATTGTTCATCACATACCCTCTTAGAACTGAAGATTCTTTGCAGTCAATTGCTAACAAGACTGGGATAGAGAGTGACTTGCTTCTTAAGTACAACCCTGGTGTAAATTTTAGCCAAGGGAGTGGTTTGGTTTATATTCCAGGGAAAGACCAAAATGGTGCCTATGTTCCCCTTCATCAAAGCACTGGAGGTCTTGCACTAAGAGTTATCGCTGGAATATCTGGTGGAGTAGTAACGGCACTTCTGCTATTGGCAATTTGTGGGTATGTTACATATTACCGAAGAAAGAAGGTATGGAAGAGGAATTTGCTCAAAGAAGAATTCACGATGAACTCGGCTAGAATTATGAATGATGAAGCCTGTGATGTTCCTGATGTAGAAGGTGGTGCCAACACCATTAGGGTCGACAATTCAGGAGAGTTTTCATATGAAGAACTAGCCAATGCTACAAATAACTTCAGTCTGGCTAATAAAATTGGTCAAGGTGGTTTTGGGAAAGTCTATTACGCAGAGCTTAATGGCGAGAAAGCTGCAGTAAAAAAGATGGACATGCAAGCAACAAGAGAATTTCTAGCTGAACTGAAAGTATTGACACGTGTTCATCACTTGAACCTGGTGCGTTTGATTGGATATTGTATTGAGAGCTCCCTTTTCCTTGTTTATGAATACATCGAGAATGGCAACTTAGGACAACATCTACGTAGATCAGATTTTAATCCTTTGCCATGGTCTTCCCGAGTTCAAATTGCTCTGGATTCTGCCAGAGGTCTGCAGTACATTCATGAGCACACCGTGCCTGTATATATCCATCGCGACATAAAGTCAGAAAACATTTTAATAGACAAAAAGTTATGTGCCAAGGTTGCAGACTTTGGTTTAACTAAGTTGATTGATGTTGGAAGTTCATCACTTCTCACAGCTAATATGAAGGGCACATTTGGTTACATGCCACCGGAGTATGCATATGGCAACGTTTCTCCCAAAATTGATGTCTATGCTTTTGGTGTTGTTCTTTATGAACTGATTTCTGCTAAAGAAGCATTGATCACGGGTGGTGTACATGGTGCTGAATTAAAGGGCCTTGTGTCTTTGTTTGATGCAGCTTTTGATCAGCAAGATCCCACAGAAGGTCTTAAGAAACTGGTGGATCCTAGGTTAGAAGATAACTACCCAATCGATTCGGTCATCAAGATGGCACTACTTGGCAAAGCATGCACAGAGAACGATCCACAACAACGTCCAAACATGAGTTCTGTTGTGGTTACTCTCACAGCACTTACTTCAAATAGTGAGGACTGGGATATTGCTTCCATCATTGAAAATCCAACTCTGGCAAATCTAATGTCTGGGAAATAG 1830 0.4142 MENRFRFSIFFMLWACMVLSAESECKRDCDLALASYSLTGGDLTYVSKLMKSEVLSKPEDILPYNSETIKNKDQVPAFTRVNVPFPCDCIGDFLGHVFQYDVVSGDTYTSIATNYSDLTTAQLLQSFNTNSQTGVPDTATVNVFVNCSCGNSEVSKAYGLFITYPLRTEDSLQSIANKTGIESDLLLKYNPGVNFSQGSGLVYIPGKDQNGAYVPLHQSTGGLALRVIAGISGGVVTALLLLAICGYVTYYRRKKVWKRNLLKEEFTMNSARIMNDEACDVPDVEGGANTIRVDNSGEFSYEELANATNNFSLANKIGQGGFGKVYYAELNGEKAAVKKMDMQATREFLAELKVLTRVHHLNLVRLIGYCIESSLFLVYEYIENGNLGQHLRRSDFNPLPWSSRVQIALDSARGLQYIHEHTVPVYIHRDIKSENILIDKKLCAKVADFGLTKLIDVGSSSLLTANMKGTFGYMPPEYAYGNVSPKIDVYAFGVVLYELISAKEALITGGVHGAELKGLVSLFDAAFDQQDPTEGLKKLVDPRLEDNYPIDSVIKMALLGKACTENDPQQRPNMSSVVVTLTALTSNSEDWDIASIIENPTLANLMSGK 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02500 609 ProSiteProfiles Protein kinase domain profile. 311 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02500 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Viun8g02500 609 Pfam LysM domain 100 132 IPR018392 -
Viun8g02500 609 Pfam LysM domain 167 195 IPR018392 -
Viun8g02500 609 FunFam LysM receptor kinase 2 290 381 - -
Viun8g02500 609 ProSiteProfiles LysM domain profile. 162 216 IPR018392 -
Viun8g02500 609 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 594 IPR044812 GO:0019199|GO:0045087
Viun8g02500 609 Pfam Protein tyrosine and serine/threonine kinase 313 580 IPR001245 GO:0004672|GO:0006468
Viun8g02500 609 FunFam PTI1-like tyrosine-protein kinase 3 382 595 - -
Viun8g02500 609 SMART serkin_6 311 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02500 609 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Viun8g02500 609 Gene3D Transferase(Phosphotransferase) domain 1 382 599 - -
Viun8g02500 609 Gene3D Phosphorylase Kinase; domain 1 284 381 - -
Viun8g02500 609 SUPERFAMILY Protein kinase-like (PK-like) 293 581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02500 Viun-Chr8 34534359 34538203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02500 7 609 Receptor kinase-like Gene Family AT3G21630 55.089 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun8g02500 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02500 - K13429 gmx:100803042 970.689