Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02485 ATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTGAGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTTACTAACAATTCTGGTGCTCAAATGCGCACCGATAGAAGACTACCTGTCGCTACCAACAGCATCCCTCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAATTGCCTAAAGGTTGGAGCACCTCCTGAAATGGTGGCTAGCTTGGAGGAGTCATGTGCCAAATGTGAATCCATCAATGCATCATCAGGAAGGACAGGAAGTGGTTCCATAGGTGAAGATCCAGCCCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACGAAACCCTTTAAAGAAGCCATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCATCACAGAACGAGGTTGATGTGCATGAAAACAACCTAGACACTCAAGCTGAAGATCGGGAACTGAAAGTTCAGCTTCTGCGCAAGTATAGTGGATATCTTGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGACAGCAACTGCTTGATTGGTGGAACCGCCATTACAAGTGGCCCTACCCTTCGGAATCTCAAAAGCAGGCACTGGCAGAATCCACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCAGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA 954 0.4486 MIGFGGNSCSELSEMDMMNMETNRKFLSLPLTNNSGAQMRTDRRLPVATNSIPQDHHYTHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEMVASLEESCAKCESINASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDTQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02485 317 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
Viun8g02485 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 117 291 - -
Viun8g02485 317 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Viun8g02485 317 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Viun8g02485 317 SMART ELK_2 201 222 IPR005539 GO:0003677
Viun8g02485 317 Pfam ELK domain 201 222 IPR005539 GO:0003677
Viun8g02485 317 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Viun8g02485 317 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Viun8g02485 317 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Viun8g02485 317 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Viun8g02485 317 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Viun8g02485 317 CDD homeodomain 233 285 IPR001356 GO:0003677
Viun8g02485 317 Pfam KNOX2 domain 123 169 IPR005541 GO:0003677|GO:0005634
Viun8g02485 317 SMART HOX_1 223 288 IPR001356 GO:0003677
Viun8g02485 317 Gene3D - 219 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02485 Viun-Chr8 34468881 34472696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02485 69 311 Homeobox Transcription Factor Family AT1G62360 68.482 8.55e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun8g02485 KNOX2 4.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02485 - - gmx:100791704 578.941