Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02484 ATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTTACTAACAATTCTGGTGCTCAAATGCGCACCGATAGAAGACTACCTGTCGCTACCAACAGCATCCCTCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAATTGCCTAAAGGTTGGAGCACCTCCTGAAATGGTGGCTAGCTTGGAGGAGTCATGTGCCAAATGTGAATCCATCAATGCATCATCAGGAAGGACAGGAAGTGGTTCCATAGGTGAAGATCCAGCCCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACGAAACCCTTTAAAGAAGCCATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCATCACAGAACGAGGTTGATGTGCATGAAAACAACCTAGACACTCAAGCTGAAGATCGGGAACTGAAAGTTCAGCTTCTGCGCAAGTATAGTGGATATCTTGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGACAGCAACTGCTTGATTGGTGGAACCGCCATTACAAGTGGCCCTACCCTTCGGAATCTCAAAAGCAGGCACTGGCAGAATCCACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCAGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA 912 0.4474 MDMMNMETNRKFLSLPLTNNSGAQMRTDRRLPVATNSIPQDHHYTHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEMVASLEESCAKCESINASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDTQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02484 303 Pfam ELK domain 187 208 IPR005539 GO:0003677
Viun8g02484 303 ProSiteProfiles ELK domain profile. 187 207 IPR005539 GO:0003677
Viun8g02484 303 Pfam Homeobox KN domain 227 266 IPR008422 GO:0003677|GO:0006355
Viun8g02484 303 CDD homeodomain 219 271 IPR001356 GO:0003677
Viun8g02484 303 Gene3D - 205 278 - -
Viun8g02484 303 SMART KNOX1_2 53 97 IPR005540 GO:0003677|GO:0005634
Viun8g02484 303 SMART ELK_2 187 208 IPR005539 GO:0003677
Viun8g02484 303 SUPERFAMILY Homeodomain-like 209 281 IPR009057 -
Viun8g02484 303 ProSitePatterns 'Homeobox' domain signature. 245 268 IPR017970 GO:0000981|GO:0006355
Viun8g02484 303 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Viun8g02484 303 ProSiteProfiles 'Homeobox' domain profile. 207 270 IPR001356 GO:0003677
Viun8g02484 303 SMART HOX_1 209 274 IPR001356 GO:0003677
Viun8g02484 303 SMART KNOX2_2 106 157 IPR005541 GO:0003677|GO:0005634
Viun8g02484 303 Pfam KNOX1 domain 55 96 IPR005540 GO:0003677|GO:0005634
Viun8g02484 303 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02484 Viun-Chr8 34468881 34473396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02484 55 297 Homeobox Transcription Factor Family AT1G62360 68.482 7.89e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun8g02484 KNOX2 4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02484 - - gmx:100791704 550.436