Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02477 ATGGCCACCGGGGCGTGGCCCGTAGCCGCCGTAACACTGGTGCTTCTCCTCTGTTCCTCCATCCCAAAATCTGAATCCCAACAAGAGTACGTCAACAACAAACAACTAAATTGCTCCAATCACGATACCAACGCCACAAGTGGCAACCTCTGCAACAGTGTTCCATCATGCATCTCCTACCTCACCTTCAAATCTTCCCCAGATTACAACAGCCCTGTCTCCATATCTTACCTCCTCAACTCCAACACCACCGTCACTGCCGCCGCAAACAATATCACCGACGTCCAATCCATCCCCGTCGACACCCTCATCACCATCCCCATCAACTGCTCCTGCTCGGGCCTCTACTATCAGCACAACGCCTCTTACACCATCAAAATACAGGGCGAAACCTACTTCCTCATCGCCAACAACACATACCAGTCCCTCACCACGTGTCAGGCTCTCATGGCCCAAAACACCTACGGCGAACGTGACCTCGTTGCGGGTCTCAACCTCAACGTTCCTCTCAGGTGTGCCTGCCCCACCCAGAAACAGAGCGAAGCAGGGTTCAAGTACTTGCTCACTTACTTGGTCTCTAAAGGAGAAACGGTTTCTTCCATCGCTGAAATTTTTGGTGTTGACCAGCAGAGCATCCTCGAAGCAAACGAGCTTTCTAATCCCTCTATTTACTACTTCACACCGATTTCAGTTCCTTTAAAAACAGAGCCGCCAACGAATTTACTGAGAGCAGCGGCTCCCCCGAACGACTCCCCGTCACCGCCGCCCCCGGCGGCGGAGGGAGACTCGGACTCTTCCAAGAAATGGGTCATTATCGGAATCGTGGTTGGGGTTGTTGTGCTGCTTCTTGTCTGCGCTGCTCTGTTTTTCTTCTGTTTCTATCGGCAGCGACGGGTACAATCGCCATCGCCGACTCCGCCAGCTAAGGCTTTCTCGGGCCCCACCCACAAACAGAGTGAAGAAATGACTCTTCCGACGACGCAGTCGTGGTCTCTTTCTTCGGAAGGGATTCGCTACGCGATCGAGTCGTTGAGCGTGTACAAGTTTGACGAGTTGCAGAAGGCTACGGGGTTCTTCAGTGAAGAGAACAAAATCAAGGGTTCTGTTTATAGGGCTTCTTTCAAGGGTGATTATGCTGCGGTTAAGATTCTCAAAGGGGATGTGTCGGGCGAGATCAACATTCTCAAGAGGATTAACCACTTCAATATTATAAGATTGTCAGGTTTTTGTGTTCACAAAGGTGACACCTATCTTGTGTACGAGTTTGCCGAGAATGATTCTCTCGAAAATTGGCTGCACAGTGTTAATAAGAAATACGAGAATTCGGTGTCTCTGAGTTGGGTGCAGAGGGTTCATATTGCTCATGACGTTGCTGACGCGCTGAATTACCTTCATAACTATACCAATCCTCCTCATGTGCATAAGAATTTGAAGAGTGGGAACGTGCTTTTGGATGGGAATTTCAGGGCAAAGGTTTCGAATTTTGGGTTGGCGAGAACGGTGGAGGGTGAAGGGGATGAAGGGGGATTTCAATTGACAAGGCATGTGGTGGGGACTCAAGGGTACATGTCACCGGAGTACATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTCGCGTTTGGGGTTGTGCTTTTGGAGCTTCTTTCAGGGAGAGAGGCTGTTGGTGGGAGTAAGAATGGTGCTGGGGAGCAGATGCTGTCGGTGACTGTGAATCAGGTGCTTGAAGGAGACAACGTTAAAGAGAAACTTCGAGGTTTCATGGATCCAAATCTGAGAGATGAATATCCATTGGAACTGGCTTATTCCATGGCTGAACTTGCCAAACGCTGTGTTGCTCGTGACCTCAATGCAAGACCACAGATTTCCGAGGTTTTCATGACTTTGTCCAAGGTTCAATCCTCTACGATGGATTGGGATCCCTCTGATGAGCTTGAACGGTCTAGATCTGTCAGCCAAATCTCTGATAGCAGATAG 1980 0.4944 MATGAWPVAAVTLVLLLCSSIPKSESQQEYVNNKQLNCSNHDTNATSGNLCNSVPSCISYLTFKSSPDYNSPVSISYLLNSNTTVTAAANNITDVQSIPVDTLITIPINCSCSGLYYQHNASYTIKIQGETYFLIANNTYQSLTTCQALMAQNTYGERDLVAGLNLNVPLRCACPTQKQSEAGFKYLLTYLVSKGETVSSIAEIFGVDQQSILEANELSNPSIYYFTPISVPLKTEPPTNLLRAAAPPNDSPSPPPPAAEGDSDSSKKWVIIGIVVGVVVLLLVCAALFFFCFYRQRRVQSPSPTPPAKAFSGPTHKQSEEMTLPTTQSWSLSSEGIRYAIESLSVYKFDELQKATGFFSEENKIKGSVYRASFKGDYAAVKILKGDVSGEINILKRINHFNIIRLSGFCVHKGDTYLVYEFAENDSLENWLHSVNKKYENSVSLSWVQRVHIAHDVADALNYLHNYTNPPHVHKNLKSGNVLLDGNFRAKVSNFGLARTVEGEGDEGGFQLTRHVVGTQGYMSPEYIENGLITPKMDVFAFGVVLLELLSGREAVGGSKNGAGEQMLSVTVNQVLEGDNVKEKLRGFMDPNLRDEYPLELAYSMAELAKRCVARDLNARPQISEVFMTLSKVQSSTMDWDPSDELERSRSVSQISDSR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02477 659 FunFam PTI1-like tyrosine-protein kinase 3 423 644 - -
Viun8g02477 659 SUPERFAMILY LysM domain 188 232 IPR036779 -
Viun8g02477 659 CDD LysM 189 222 IPR018392 -
Viun8g02477 659 Gene3D Phosphorylase Kinase; domain 1 324 422 - -
Viun8g02477 659 MobiDBLite consensus disorder prediction 641 659 - -
Viun8g02477 659 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 643 - -
Viun8g02477 659 Gene3D LysM domain 188 242 IPR036779 -
Viun8g02477 659 ProSiteProfiles LysM domain profile. 188 231 IPR018392 -
Viun8g02477 659 ProSiteProfiles Protein kinase domain profile. 338 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02477 659 MobiDBLite consensus disorder prediction 240 264 - -
Viun8g02477 659 Gene3D Transferase(Phosphotransferase) domain 1 423 653 - -
Viun8g02477 659 MobiDBLite consensus disorder prediction 299 325 - -
Viun8g02477 659 SMART LysM_2 122 169 IPR018392 -
Viun8g02477 659 SMART LysM_2 189 232 IPR018392 -
Viun8g02477 659 MobiDBLite consensus disorder prediction 637 659 - -
Viun8g02477 659 SUPERFAMILY Protein kinase-like (PK-like) 335 627 IPR011009 -
Viun8g02477 659 Pfam LysM domain 190 232 IPR018392 -
Viun8g02477 659 Pfam Protein kinase domain 387 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02477 Viun-Chr8 34447252 34449691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02477 1 652 Receptor kinase-like Gene Family AT2G33580 52.950 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun8g02477 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02477 - - gmx:100818534 994.571