Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02472 ATGATGTTCACAAAGCTTGTAACATTTCAGTTTATTCTCATCACCTTTTTCTTCTCACTTTTAAGGTTCTCTTCCTCGGAAGTTTCTGGTGTTTCTTTATCCAACGGTACTGTTATGTTTGGCCATGAAGCTGTCGAAGATAAAAACATTGAAGCAAGTGCTCTATTGAAGTGGAAAGCCAGCCTTGATAACCAAAGCCAGGTTTCCTTGTCTTCTTGGTCTACTTTCACTAGCCCTTGCAAGTGGAAGGGCATAGTTTGTGATGAATCCAACTCTATCAGCACTATAAATCTTGTAAACTTTGGACTAAAAGGTACACTTCTCAATCTAAACTTCTCATCCTTTCCTAAGCTTCTGAGGTTTCATGTAAGTTACAACAACCTCGGTGGACCTATTCCTCGTCAACTTGGTAACATGTCCAAACTTTCTGAGTTGAGAATGGATCATAATTACTTTAGTGATTCCATCCCCCAAGAAATAGGGACACTGCATAACTTGGAGTATCTGTTCTTGAGAGCAAATCAACTTTCTGGTTCCATCCCCCTCACAATTGGAATGTTGACAAATCTTGTTACACTTGATTTATCATCCAACCATCTCTCTGGTACAATCCCTTCACTAAGAAACTTGACAAATTTACAAGAACTTATCCTCTTCAACAACCTTCTCTCTGGTCCTATCCCTGAGCATTTGGGAGGACTTCATCATCTCACAACAATCAAATTGTTAAAAAATCATATTTCTGGGCTAATCCCTTCTTCCATAGGAGACCTGGCTAATTTGATGAAACTTCAGCTCACTCGTAATCAACTACAGGGGTCAATTCCTTCCTCTCTTGGAAACTTGACAAAGCTCATTGAATTGTCCATGTCTGAAAACATGCTTTCTGGTTCAATTCCTGCTTCCATAGGAAACTTGGTCAATCTAGAAAAGCTTAACCTTGCACAAAACAAACTTTCTGGACCTATTCCCTCTATCTTCAGAAATTTGACTAAGCTTACCTTCCTATTACTTCATGTGAACAAACTTACCGGAAATTTCTCAGCAGCAACAAGTAACCTTACCAATTTAGTAAATTTACAACTAAGCTCTAATCATTTCACTGGCCCTTTGCCACAATATATTTGCCTTGGAGGGTCACTTTTATGTTTTGCAGCCAATGAAAATCGTTTCACTGGCCCAATTCCATCAAGTTTGAAGAACTGCTCTAGTCTTGAAAGGCTCAACCTTGCAGAAAATATGTTGATGGGAAACATTAATGATTTTGGTATGTATCCAAATTTGGAGTACATTGATCTGAGTAGAAATGCCTTCAACGGTCACCTTTCATCAAATTGGGTCAAATGTCATAATCTCATAGGCCTGTTTATCTCATACAACAGATTATTCGGTGGTATACCCCCAGAGTTAGGCCAGGCACCTAAATTACAAAGGCTTAAACTTTCTTCAAACAGCCTAACGGGAAAGATTCCAAAAGAACTTGGGAACTTGACCCAGTTGTTTGAACTCTCCATAAGTAACAACAATCTTTCAGGCAACATTCCCTTCGAAATTGGTTCCTTAAAGCAACTTCGGATCTTTGATCTTTCAACAAATGTTTTAAGTGGTCCAATCCCAAAACAGCTCGGAAGGTTGCTCAAGTTAAATCACTTGAACTTAAGCCATAACAAATTAAATGAAAGCATTCCGTCTGAATTTAGCCAACTGCAACATCTTCGAGAACTTGATCTTAGTTGGAATTTGTTGAATGGAAAAATTCCAGCAACACTTCGAAAATTGAAGATGTTGGAAAACTTGAACCTCTCCCACAACAATCTCAGCGGAAACATTTCCTCAAGTTTTAAGGATATGCTCAGTTTGACAAACGTTGACATATCTAATAACCAATTAGAGGGTCCAATTCCTAACAATCGAGCCTTCCTTAAGGCTCCATTTCAAGCATTGCAGAACAACAAAAACTTGTGTGGCTATGCTTCTGGGCTGATGCCTTGCCCGCAGTTGTTGAGTCACAATCCTCATCGTAAGAAGATCAAGATGTTACTCTTCCTTACTTTGGGTGCATTATTTGTTGTTGGAGTTTCACTATACATTCATTGGCAAAAAGCAAGAAAAATCAAAAAGCAAGAGAGAGAAGAAAAAAATGGAGATCTTTTTTCTATATTGCATTATGATGGGAAAATAGTGCATGAAACAATCATCGAAGCAACGAATAATTTCGATGAAAGATATCTCATCGGAAAAGGAGGGTTTGGAGGTGTTTACAAGGCCATCTTACCCTCTGGCCAGATTGTTGCTGTGAAGAAACTTCAGGTTGAAGTTGACAGTGAAATGGTTGATTTTAAGGCTTTTACATCTGAAGTTCGAACCCTGACAGAAATCAAACATCGTAACATTGTGAAGTTGCATGGGTTTTGTGAACATCCACGCTATCGTTTCTTGGTTTATGAGTTCGTAGAAGGTGGCAGCTTGGACAAAGTACTAAACAACGACACACATGCATCAATGTTTGACTGGAATAAGAGGGTTAACGTTGTTAAAGGTGTGGCAAATGCTTTGTATCATATGCACCATGGTTGCTCTCCTTCTATTGTTCATCGTGACATATCAAGCAAGAATGTTCTCATAGATTTGGAATATGAAGCTCGCTTATCTGACTTTGGAACAGCAAAGATTCTTAATCCTAATTCACGTAATTTAACTTCGTTTGCAGGCACTTATGGATATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAATGTGATGTGTTCAGTTTTGGGGTGCTTTGTTTGGAAATAATAATCGGAAATCACCCAGGAGATTTGATTTCTTCGATGCATTCACCATCTTCAACATCAGTAACAGCTAATTTGCTATTGAAGGATGTGATGGACCAACGATTACCTTTTCCAGTGATGCCAGTTGTTAAGGAGGTGGTAATCATTGCAAAAGTGGCATTTGCTTGTTTGAATGAAAGACCACTTTCTCGTCCAACCATGGAAGATGTTTATAACAAGTTTGTGATGCCTAAGTCACCTTTAACGAGGGATACACTCAACACCATTGTTCTTGGACAACTTCAAAATTATTGA 3099 0.3869 MMFTKLVTFQFILITFFFSLLRFSSSEVSGVSLSNGTVMFGHEAVEDKNIEASALLKWKASLDNQSQVSLSSWSTFTSPCKWKGIVCDESNSISTINLVNFGLKGTLLNLNFSSFPKLLRFHVSYNNLGGPIPRQLGNMSKLSELRMDHNYFSDSIPQEIGTLHNLEYLFLRANQLSGSIPLTIGMLTNLVTLDLSSNHLSGTIPSLRNLTNLQELILFNNLLSGPIPEHLGGLHHLTTIKLLKNHISGLIPSSIGDLANLMKLQLTRNQLQGSIPSSLGNLTKLIELSMSENMLSGSIPASIGNLVNLEKLNLAQNKLSGPIPSIFRNLTKLTFLLLHVNKLTGNFSAATSNLTNLVNLQLSSNHFTGPLPQYICLGGSLLCFAANENRFTGPIPSSLKNCSSLERLNLAENMLMGNINDFGMYPNLEYIDLSRNAFNGHLSSNWVKCHNLIGLFISYNRLFGGIPPELGQAPKLQRLKLSSNSLTGKIPKELGNLTQLFELSISNNNLSGNIPFEIGSLKQLRIFDLSTNVLSGPIPKQLGRLLKLNHLNLSHNKLNESIPSEFSQLQHLRELDLSWNLLNGKIPATLRKLKMLENLNLSHNNLSGNISSSFKDMLSLTNVDISNNQLEGPIPNNRAFLKAPFQALQNNKNLCGYASGLMPCPQLLSHNPHRKKIKMLLFLTLGALFVVGVSLYIHWQKARKIKKQEREEKNGDLFSILHYDGKIVHETIIEATNNFDERYLIGKGGFGGVYKAILPSGQIVAVKKLQVEVDSEMVDFKAFTSEVRTLTEIKHRNIVKLHGFCEHPRYRFLVYEFVEGGSLDKVLNNDTHASMFDWNKRVNVVKGVANALYHMHHGCSPSIVHRDISSKNVLIDLEYEARLSDFGTAKILNPNSRNLTSFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCLEIIIGNHPGDLISSMHSPSSTSVTANLLLKDVMDQRLPFPVMPVVKEVVIIAKVAFACLNERPLSRPTMEDVYNKFVMPKSPLTRDTLNTIVLGQLQNY 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02472 1032 Gene3D Ribonuclease Inhibitor 382 666 IPR032675 -
Viun8g02472 1032 FunFam Nuclear pore complex protein NUP107 48 206 - -
Viun8g02472 1032 FunFam Leucine-rich repeat receptor protein kinase MSP1 701 817 - -
Viun8g02472 1032 Pfam Leucine Rich Repeat 596 615 IPR001611 GO:0005515
Viun8g02472 1032 SUPERFAMILY L domain-like 59 375 - -
Viun8g02472 1032 SUPERFAMILY RNI-like 348 640 - -
Viun8g02472 1032 ProSitePatterns Tyrosine protein kinases specific active-site signature. 863 875 IPR008266 GO:0004672|GO:0006468
Viun8g02472 1032 Gene3D Phosphorylase Kinase; domain 1 699 817 - -
Viun8g02472 1032 PANTHER LEUCINE RICH REPEAT KINASE 2 280 1015 - -
Viun8g02472 1032 Pfam Leucine rich repeat 455 510 IPR001611 GO:0005515
Viun8g02472 1032 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Viun8g02472 1032 Pfam Leucine rich repeat 523 582 IPR001611 GO:0005515
Viun8g02472 1032 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 354 668 - -
Viun8g02472 1032 SUPERFAMILY Protein kinase-like (PK-like) 726 1008 IPR011009 -
Viun8g02472 1032 Pfam Protein kinase domain 743 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02472 1032 ProSitePatterns Protein kinases ATP-binding region signature. 745 768 IPR017441 GO:0005524
Viun8g02472 1032 Gene3D Ribonuclease Inhibitor 302 381 IPR032675 -
Viun8g02472 1032 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
Viun8g02472 1032 FunFam Leucine-rich repeat receptor protein kinase EMS1 251 350 - -
Viun8g02472 1032 SMART LRR_typ_2 545 568 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 497 521 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 593 616 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 569 592 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 306 329 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 354 378 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 210 234 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 139 163 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 258 282 IPR003591 -
Viun8g02472 1032 SMART LRR_typ_2 187 209 IPR003591 -
Viun8g02472 1032 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Viun8g02472 1032 ProSiteProfiles Leucine-rich repeat profile. 547 569 IPR001611 GO:0005515
Viun8g02472 1032 FunFam MDIS1-interacting receptor like kinase 2 818 1015 - -
Viun8g02472 1032 ProSiteProfiles Protein kinase domain profile. 739 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02472 1032 Gene3D Transferase(Phosphotransferase) domain 1 818 1018 - -
Viun8g02472 1032 Gene3D Ribonuclease Inhibitor 48 206 IPR032675 -
Viun8g02472 1032 Gene3D Ribonuclease Inhibitor 207 301 IPR032675 -
Viun8g02472 1032 PRINTS Leucine-rich repeat signature 593 606 - -
Viun8g02472 1032 PRINTS Leucine-rich repeat signature 190 203 - -
Viun8g02472 1032 SMART LRR_sd22_2 163 184 - -
Viun8g02472 1032 SMART LRR_sd22_2 569 601 - -
Viun8g02472 1032 SMART LRR_sd22_2 187 212 - -
Viun8g02472 1032 SMART LRR_sd22_2 306 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02472 Viun-Chr8 34408027 34411542 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02472 44 911 Receptor kinase-like Gene Family AT4G08850 44.884 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun8g02472 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02472 - - gmx:100800924 1460.28