Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02470 ATGGTCTTCACTGTGCTTTCAGTATCTCTCTGTTCATTCTTAGGCCTCCATTTCTTCTCCCTACTTTTCACCACTTTTTCTTTTGCTGCCACCATTGATGAAAACCAAGTGAGGGAAGCAGGTGCTTTACTTGAGTGGAAAGCTAGCTTTGAAAACCAAAGCCAAGCTTCTCTGTCTTCATGGAGTGAAGGTGTGAGTCACTGCAAGTGGAAAGAAATCATTTGTGACAGATCCAACTCTGTCACCTCTATAAATGTAGCAAATCATGGCCTAAAAGGTACTCTTCACACTCTCAACTTCTCATCTTTTCCCAATCTGCTAACTCTGGATGTTAGTAACAACAGTTTCAGTGATACCATTCCTCACCAAATTGCTAACTTCTCCAGAGTTTCTGAGTTGATAATGAATAACAATAATTTTAGCGGTCCAATCCCCATTTCCATGACCAAGTTAGCTACCTTGAAGATTCTAAACTTGAAATTCAATAGCATTTTTGGCCCTCTTCCTAAAGAGATTGCAGAATTGAAAAACTTAGAGCGTCTGTTATTTCAATCAAATCACCTTTCTGGTACCATTCCTCCAACGATTGGAAGGATGGCCAACCTGGTTGAACTTAATCTGCAACTCAACTCTATCAATGGTACAATCCACCCTTCAATTAGAAACTTGACAAATTTAAAATTCCTCAGGCTCCAACAAAATAGTCTCTCTGGCCCCATTCCACACTTCATAGGAGAGATGACCAATTTGCATGTTCTTGAACTCGATCAAAATAGTCTTACAGGACAAATTCCTTCCAATATTGGAAACTTGACAAAGATGGTTAATCTGTCCCTGGCCGGTAACATGCTTTATGGACCAATTCCTCCCTCCCTTGGAAACTTGGTCAATCTAATGGCCTTAGAACTTTCCAGGAACAATCTTTCCGGAGTTGTTCCTCCCACCTTGGGAAATTTGACAAACCCCATCTTTTTCATTTTGTCAAAAAACAAACTTGAAGGCAGATTACCACCAGGAATGAATAACTTCACCAATTTGATGAACTTACAACTAGCTGAAAATAGTTTCACTGGCCCTCTGCCACAACAAGTTTGCCTTGGTGGGTCACTAAAGACTCTCACTGCTGAAGGTAATCATTTCACGGGTCCAGTTCCAAAAAGCCTGAAAAATTGCTCCAGTCTTACTAGACTCAAACTAGAGGGAAACTTTTTGAGTGGGAATATATCAGATGATTTTGGTGTTTATCCATTCTTGAAATACATTGATCTGAGTGGGAATAACTTTTACGGCGACATTTCTCCAAATTGGGCAAAGTGTCCTCTTCTCGAAAGCCTTATAATGCCCAACAACAACTTAACCGGTAGTATCCCACCAGAACTCAGCCGGGCACCAAAGTTAGCAGAACTTAACTTGTCTTCAAACCATTTAACCGGGAGAATTCCAAAAGAACTCGGGAAGCTGACATCTTTACTGGAGCTATCGGTAAGCAACAATGAACTTTCTGGCTCCATTCCTGTAGAAATAGGTGCTTTGTCCAACCTTAACATTCTGGAGCTTTCATCGAATAGTTTAGATGCAGCAATTCCAAAACAGTTGGGAGAGTTATTCAAGTTGATTCGCTTGAACTTGAGCAGCAACAGATTGACAGAAAGCATTCCCTTGGAATTGGGTCGTTTGCAATCTCTTGAAAGCCTTGATCTTAGTGTCAATTTGTTAAATGGAGAAATACCATCTGTAGTTGCAAGTATGCAGAATTTGAAAACGCTAAACCTCTCTCACAACCATCTCTCTGGAGCCATTCCATCTAATTTTAATGATGGCTTGACAAAGATTGACATATCTAACAACCAATTGGAGGGTCCAGTTCCTAACACTCGGGCCTTTCGCAATGTTTCATTTGATGCATTGAAAGGTAATAAAGGCTTGTGTGGAAATGTCACCGGTTTGGTGCCTTGCAACAGTCGTAATGGTAAAGTGAAAAGAAATGTCACCATGTTGGCATTAGTCCTTACTTTGGGTGCTCTGCTTCTGGTAGTACTCGTGGTTGGAGTTTTGTTGTGTATTTGCAACAGAAGAAGAACAGCAACAGAAGGCAAAAAGAAGGATGCTAAAGAAGAAGAAACTCAGGATAATTATGCCATATGGAGTTATGATGGAAAACTAGTGTATGAGAATATCATTGAAGCCACAGAGAATTTTGATGACAAATATCTCATTGGAGAAGGAGGGTCTGCATCTGTTTATAAGGCTAAATTACCCACAGGACAGATTGTTGCTGTGAAAAAGATCAATGCTGCACCCGATGAAGAAACACCGGATTTAAAAGCTTTTATGACTGAGGTTAGAGCCTTGGCAGAAATCAAGCATCGTAACATTGTGAAGTCACATGGATATTGTATACATCCACGTTACTCCTTTTTGGTTTATGAGTTCCTTGAGGGTGGTAGTTTGGATAAAGTACTCATGGATGATGCACGTGCAACAACGTTTGATTGGAACATGAGGGTAAAGGTTGTTAAAGGTGTCGTAAATGCTTTGTATCATATGCATCATGGTTGCTTTCCTCCTATCATTCATCGAGACATATCAAGCAAGAATGTTCTCATAGATTCTGAATACGAAGCCCGCATTTCTGACTTTGGAACAGCTAAAATTTTGAATCCTGATTCTCGCAATTTAACCGCTTTTGCAGGCACATATGGGTATGCTGCACCAGAGCTTGCTTATACCATGGAAGTGAATGAAAAGTGTGATGTGTTCAGTTTTGGAGTGCTTTGTTTTGAAATAATGATGGGAAAGCATCCAGGAGATCTCATTCCATCGTTTTTTCCGTCCTCTGAAACAGCATCAGTGTATAATTTGCTGTTGAAGGATATGTTGGACCAAAGATTACCCCTTCCAGAGAATCCAGTTGCTGAGGAGGTGATTTTGATTGCCAAAATAACATTTGCTTGCTTAAGTGAAACTCCTCGTTTTCGTCCAAGCATGGAACAAGTCTATAACGATTTTCTGATGCCAAAATCATCTTCACTCAATTCACTCTCCATCCTCACACTTGCTCAACTTGTCAATGATTGA 3078 0.4025 MVFTVLSVSLCSFLGLHFFSLLFTTFSFAATIDENQVREAGALLEWKASFENQSQASLSSWSEGVSHCKWKEIICDRSNSVTSINVANHGLKGTLHTLNFSSFPNLLTLDVSNNSFSDTIPHQIANFSRVSELIMNNNNFSGPIPISMTKLATLKILNLKFNSIFGPLPKEIAELKNLERLLFQSNHLSGTIPPTIGRMANLVELNLQLNSINGTIHPSIRNLTNLKFLRLQQNSLSGPIPHFIGEMTNLHVLELDQNSLTGQIPSNIGNLTKMVNLSLAGNMLYGPIPPSLGNLVNLMALELSRNNLSGVVPPTLGNLTNPIFFILSKNKLEGRLPPGMNNFTNLMNLQLAENSFTGPLPQQVCLGGSLKTLTAEGNHFTGPVPKSLKNCSSLTRLKLEGNFLSGNISDDFGVYPFLKYIDLSGNNFYGDISPNWAKCPLLESLIMPNNNLTGSIPPELSRAPKLAELNLSSNHLTGRIPKELGKLTSLLELSVSNNELSGSIPVEIGALSNLNILELSSNSLDAAIPKQLGELFKLIRLNLSSNRLTESIPLELGRLQSLESLDLSVNLLNGEIPSVVASMQNLKTLNLSHNHLSGAIPSNFNDGLTKIDISNNQLEGPVPNTRAFRNVSFDALKGNKGLCGNVTGLVPCNSRNGKVKRNVTMLALVLTLGALLLVVLVVGVLLCICNRRRTATEGKKKDAKEEETQDNYAIWSYDGKLVYENIIEATENFDDKYLIGEGGSASVYKAKLPTGQIVAVKKINAAPDEETPDLKAFMTEVRALAEIKHRNIVKSHGYCIHPRYSFLVYEFLEGGSLDKVLMDDARATTFDWNMRVKVVKGVVNALYHMHHGCFPPIIHRDISSKNVLIDSEYEARISDFGTAKILNPDSRNLTAFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCFEIMMGKHPGDLIPSFFPSSETASVYNLLLKDMLDQRLPLPENPVAEEVILIAKITFACLSETPRFRPSMEQVYNDFLMPKSSSLNSLSILTLAQLVND 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02470 1025 FunFam Nuclear pore complex protein NUP107 36 194 - -
Viun8g02470 1025 ProSiteProfiles Protein kinase domain profile. 733 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02470 1025 ProSitePatterns Tyrosine protein kinases specific active-site signature. 857 869 IPR008266 GO:0004672|GO:0006468
Viun8g02470 1025 Pfam Leucine rich repeat N-terminal domain 39 76 IPR013210 -
Viun8g02470 1025 Gene3D Transferase(Phosphotransferase) domain 1 812 1013 - -
Viun8g02470 1025 FunFam Leucine-rich repeat receptor protein kinase MSP1 696 811 - -
Viun8g02470 1025 FunFam Leucine-rich receptor-like protein kinase family protein 240 338 - -
Viun8g02470 1025 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 343 656 - -
Viun8g02470 1025 Pfam Leucine Rich Repeat 585 604 IPR001611 GO:0005515
Viun8g02470 1025 Pfam Protein kinase domain 735 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02470 1025 SUPERFAMILY RNI-like 301 620 - -
Viun8g02470 1025 PRINTS Leucine-rich repeat signature 298 311 - -
Viun8g02470 1025 PRINTS Leucine-rich repeat signature 583 596 - -
Viun8g02470 1025 Gene3D Phosphorylase Kinase; domain 1 693 811 - -
Viun8g02470 1025 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Viun8g02470 1025 SMART LRR_typ_2 487 511 IPR003591 -
Viun8g02470 1025 SMART LRR_typ_2 295 318 IPR003591 -
Viun8g02470 1025 SMART LRR_typ_2 583 607 IPR003591 -
Viun8g02470 1025 SMART LRR_typ_2 535 559 IPR003591 -
Viun8g02470 1025 SMART LRR_typ_2 103 127 IPR003591 -
Viun8g02470 1025 SMART LRR_typ_2 247 271 IPR003591 -
Viun8g02470 1025 SMART LRR_typ_2 175 199 IPR003591 -
Viun8g02470 1025 FunFam MDIS1-interacting receptor like kinase 2 812 1009 - -
Viun8g02470 1025 PANTHER LEUCINE RICH REPEAT KINASE 2 294 1009 - -
Viun8g02470 1025 SUPERFAMILY Protein kinase-like (PK-like) 716 1003 IPR011009 -
Viun8g02470 1025 Gene3D Ribonuclease Inhibitor 196 324 IPR032675 -
Viun8g02470 1025 SUPERFAMILY L domain-like 75 402 - -
Viun8g02470 1025 Gene3D Ribonuclease Inhibitor 327 655 IPR032675 -
Viun8g02470 1025 ProSitePatterns Protein kinases ATP-binding region signature. 739 762 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02470 Viun-Chr8 34390919 34394257 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02470 21 905 Receptor kinase-like Gene Family AT4G08850 44.589 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun8g02470 Pkinase 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02470 - - vra:106762950 1699.49