Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02454 ATGCAAGTGGCGGCAGAACTTCAACACACCCATCACCACCAAGACACTCCGATGTGCCGTCAAATCCAGCTCACTATAACCGATCACACCCTCTCGCACACCACCGGGGATGGTGCCTCCGACAAGCTCGACGGGGAGGATCTCTTCGTTCCGCCTCTAAACTTCTCCATGGTTGATAATGGCATTTTCCGCTCTGGCTTCCCAGAACCTGCCAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATCATATATTTGTGTCCCGAGCCGTATCCGGAGGCCAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCATTTTGGGATCGAGGGTCATAAGGAACCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCGCTGAAAGTTGTCCTTGATGTCAGGAATCACCCGGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACGGGTTGTTTAGTAGGATGCTATAGAAAATTGCAGAAGTGGTGCTTGTCATCTGTGTTTGATGAGTACCAGCGGTTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGGTTCGTAGAGTTGTTTGATATTTCGAGCATGAAACATTCGCCTATACCCTTTTCATGTCTGAAGAGGTAA 636 0.489 MQVAAELQHTHHHQDTPMCRQIQLTITDHTLSHTTGDGASDKLDGEDLFVPPLNFSMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHSPIPFSCLKR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02454 211 Gene3D Protein tyrosine phosphatase superfamily 48 198 IPR029021 -
Viun8g02454 211 CDD PFA-DSP_Siw14 48 195 - -
Viun8g02454 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 205 IPR020422 GO:0006470|GO:0008138
Viun8g02454 211 PRINTS Plant and fungal dual specificity phosphatase signature 122 136 IPR020428 GO:0016791
Viun8g02454 211 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Viun8g02454 211 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Viun8g02454 211 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Viun8g02454 211 FunFam probable tyrosine-protein phosphatase At1g05000 48 198 - -
Viun8g02454 211 Pfam Tyrosine phosphatase family 50 202 IPR004861 -
Viun8g02454 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Viun8g02454 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 196 IPR029021 -
Viun8g02454 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 38 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02454 Viun-Chr8 34258919 34263195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02454 29 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.038 8.28e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02454 K18045 - gmx:100814279 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02454 8 34258919 34263195 Viun8g02454 8 34258919 34263195 ECH