Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02443 ATGATTTCCCTGTTCATTTCAAATGGCTTCTTTCTTTCCCATGGCGCAATGCCTCCGAAACCTCTTCCAACAAAAACCCCATCTTTCATTTCCCTCAAAGTTCGATGCTTTCGTGCTTCTGAGCCAAACCCAGTTACCGATTTTCCTCCTCCAAGTTCCGTTCTCTTGCCACGTTCCATCAAACGGGTCTCTCGCCTCTTGAGGACCGAACTTCAACGCGCTCTAATGGATTACCTGCATTTCACTCGCGGCTACACCTTCTCCGACGCTGAGTACATCAGCAAGAACTCGCCTCGTTTTGTTGAATCATTGGTGTCAATGATTGACGACAAATATGACGTTCCCCGGTCGTTGCGGAAGTTCTTCAGGTACAACCCCATTAACGAGTTTGAACCGTTTTTCGAGAGTTTGGGAATTGGCCCTTCTGAGTTGCATTTGTTTCTCCCCCATGACATGATTTTCTTGGCTGATGATCACGTGTTGCTTCATAATTTCCATGTTTTGTGTAACTACGGGGTGCCGAGGAATAGAATGGGGAGGTTCTATAAAGAGGCAAAAGAAATTTTTGGGTATGCAGGTGGGTTGTTGGAGTCAAAGTTTCAAGGTTATGAGAATTTGGGTTTGAGTAGATCAACTGTTGTGAAGCTTGTTGTTTGCTGTCCTTTGCTTTTGGTTGGTGATGTCAATTGTGAATTAGTTGCTGTGCTTGAGTGGCTGAAGAGAATAGGGATTGAAAGTGATTCGATGGTGAATTACTTGTCTTGTTCAAGGACATATAGTTGGAAAAGAATGCTTGATACCTTGCAGTTTCTTCATAAAGTGGGTTATTCTGAGGAACGGATCCACAATTTGTTTAGGGGAAATCCTAAACTGTTTTTGGAAGGTATTGGGAAGAAGGTGTACTTATTTTTTGGTCGATTGGTTAAAATTGGTGTTGAGATAAATGTGATTTATTCTTATTTTGTGGAGTATCCCAATATCTTGTCGTATAAGTGTGCGAAAAATATGTTGAAAGTGATTGGCTTTTTGTGTGCTATTGGAATGGGAAAAGATGACATTGCTCACATTTTCTCTAAGCACGTGCATCTCTTGAGTACATGTTCCTTGAAAGGTCATAAAACTGTCTGCCAGGAGTTAAAAGTTGGTAAAGCTGATTTGTACCAAATCATAAAGGATGATCCGTTGAAGCTAATTAGTTTTTCATCAAAGCAGCAACAGAAGAGCGATGGAAAGGTAGATAGTCATGACCCACGAAACTATTTGGAAAAAAGAACTTTCTTGCTGAAATTGGGATATACTGAAAACTCTGAAGAGATGGCAAGAGCATTAAGAATGTTCAGAGGTAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTTGTAGAAGCTGGTTTGGACTATAATAGTGTGATTGAAATGATAAAACGAGCTCCTATGATTCTAAGCCAGAACAAAACTGTAATTAAAAGGAAGATTGATTTCTTAAAAAATGTTTTAGATTACCCACTAGAATGTCTCGTGGGATTCCCAACATACTTTTGCCATGATTTGGACAAAATTGTTGAAAGACTTTCAATGTATGCATGGCTGAAGGAGAGGAATGCCATAAATCCTATGTTAACCTTGAGTACCATAGTTGCATCCAATGATAAACGCTTTGAAAAGTACTTTGTGAACGTGCATCCTCAAGGTCCAGCCGTCTGGAAGAGTTTAAAAAGGTTATCTATTAAAGATAAGAACTAA 1743 0.3987 MISLFISNGFFLSHGAMPPKPLPTKTPSFISLKVRCFRASEPNPVTDFPPPSSVLLPRSIKRVSRLLRTELQRALMDYLHFTRGYTFSDAEYISKNSPRFVESLVSMIDDKYDVPRSLRKFFRYNPINEFEPFFESLGIGPSELHLFLPHDMIFLADDHVLLHNFHVLCNYGVPRNRMGRFYKEAKEIFGYAGGLLESKFQGYENLGLSRSTVVKLVVCCPLLLVGDVNCELVAVLEWLKRIGIESDSMVNYLSCSRTYSWKRMLDTLQFLHKVGYSEERIHNLFRGNPKLFLEGIGKKVYLFFGRLVKIGVEINVIYSYFVEYPNILSYKCAKNMLKVIGFLCAIGMGKDDIAHIFSKHVHLLSTCSLKGHKTVCQELKVGKADLYQIIKDDPLKLISFSSKQQQKSDGKVDSHDPRNYLEKRTFLLKLGYTENSEEMARALRMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILSQNKTVIKRKIDFLKNVLDYPLECLVGFPTYFCHDLDKIVERLSMYAWLKERNAINPMLTLSTIVASNDKRFEKYFVNVHPQGPAVWKSLKRLSIKDKN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02443 580 Pfam mTERF 268 497 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 Pfam mTERF 244 364 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 Pfam mTERF 440 554 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 PANTHER CGI-12 PROTEIN-RELATED 71 560 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 FunFam Transcription termination factor MTEF18, mitochondrial 303 571 - -
Viun8g02443 580 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 SMART mt_12 503 534 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 SMART mt_12 319 349 IPR003690 GO:0003690|GO:0006355
Viun8g02443 580 Gene3D Transcription termination factor 3, mitochondrial 300 571 IPR038538 -
Viun8g02443 580 Gene3D Transcription termination factor 3, mitochondrial 110 244 IPR038538 -
Viun8g02443 580 FunFam mTERF family protein 108 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02443 Viun-Chr8 34112364 34114314 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun8g02443 mTERF 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02443 - - gmx:100803162 956.051