Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02393 ATGACTTCTGCAGCCAAGGAGTACTTCTTCAAAATCTTCTCCCCAGAGAAACACTCTGAAACAATGGTTATTCCAAGTTGTTTTGTGAAGTCTGTACGTTTAGGAAGAAGGAGAATCCCTAAAGATATCATCCTCAGAAATGTTAGTGGTAGGGTTTGGTGTGTGAAAACTCGTCTCGTTGGACACAAAATCTACTTTCAAGAGGGTTGGAAGGTTTTTCAAGAAGAGAACTGTATAAGAAAAGCAGATTTTCTACTTTTCAAGTATGATGGGACCAATGTATTCAAGGTGGTAATTCTTGAGCAATCGTCACGCTGTGAAAGGAGAGAAGTTGAAGAAGATGAGGTGATAGACATTACTGAAGAGGAAGAGAATGAAAACTCTGAAGACTCTATGATGGAGGAGGAGGAAGATAGTGATGATGAGGATGAGTACTTAGAGCCAGCAATAGTAAGTTTTTTCTGCATTTCTTATGAGTGCATGAATCAGTTTTTATTGATGATTCATTTATCTGGTTCAGGGGATAGTGCAACGAGTTCCATTCCCAAGACTGAAGATCCTCATCTTGAAGACTATGAATTTGATCCACGAAAGTATATTCAGCATGAAAATCCATACTTTGAAGCAAAACTGTACAAAAATAGACCCAACGAATTGCATGTTCCAGCAAATGTCCTCAGAGACTCGTCCCTTACTTTTCCAGAAGAGATCACCCTTTCACGTTGCAGATGCTTCCAAAGTGAGGACACTAAGAGAAATGAATTACGAAACAATCATTGTGGCTTTTCACGACAGACACAGATGTATTCGAAAGTAACAAAAGTGTCCGAGTGGCAAGATGGTCGAGTATGTATTAAAGGGTGGACAAGCTTTTGTACAAAGAACAAGATCAAAGAAAATGATGTGTGTATCTGTGAAATTGTATCAGGGAAAGACCAAATAGTAAGAACACTTCAGGTGCACGTGCTTGGTGCTAGGAACGGATGA 987 0.3941 MTSAAKEYFFKIFSPEKHSETMVIPSCFVKSVRLGRRRIPKDIILRNVSGRVWCVKTRLVGHKIYFQEGWKVFQEENCIRKADFLLFKYDGTNVFKVVILEQSSRCERREVEEDEVIDITEEEENENSEDSMMEEEEDSDDEDEYLEPAIVSFFCISYECMNQFLLMIHLSGSGDSATSSIPKTEDPHLEDYEFDPRKYIQHENPYFEAKLYKNRPNELHVPANVLRDSSLTFPEEITLSRCRCFQSEDTKRNELRNNHCGFSRQTQMYSKVTKVSEWQDGRVCIKGWTSFCTKNKIKENDVCICEIVSGKDQIVRTLQVHVLGARNG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02393 328 CDD B3_DNA 8 100 IPR003340 GO:0003677
Viun8g02393 328 PANTHER B3 DOMAIN-CONTAINING 6 311 - -
Viun8g02393 328 Gene3D - 191 326 IPR015300 -
Viun8g02393 328 SUPERFAMILY DNA-binding pseudobarrel domain 200 324 IPR015300 -
Viun8g02393 328 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Viun8g02393 328 SMART B3_2 9 103 IPR003340 GO:0003677
Viun8g02393 328 MobiDBLite consensus disorder prediction 117 140 - -
Viun8g02393 328 Pfam B3 DNA binding domain 9 99 IPR003340 GO:0003677
Viun8g02393 328 Gene3D - 1 106 IPR015300 -
Viun8g02393 328 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02393 Viun-Chr8 33794023 33795602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02393 9 323 B3 DNA Binding Superfamily AT3G06160 27.381 9.73e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun8g02393 B3 9.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02393 - - gmx:100810634 372.859