Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02392 ATGGGGAGCAAGAACCTCTCCTCAAAATGTTTTTTTTACCATAAGCATTTTCAAAATGGGGTGAGGAATCATTTTTTGCGGTTGTTTCTCCTTTCGTGGTTTATTGTGGTGGCAGTGTTTGGTGAAGAGCGTTGGGATGGGGTTGTTGTGACACAGTCAAACTTCCTAGCACTTCAGGCATTCAAGCAGGAGTTGGTTGATCCCGAAGGCTTCCTGAGAAGCTGGAACGACAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGTATCAAGTGTGCCCAGGGACAGGTTATTGTGATCCAGCTTCCATGGAAGGGGTTGAAGGGGCGTATCACTGATAAAATTGGCCAACTTCAGGGGCTGAGAAAGCTCAGTCTCCACGATAACCTAATTGGTGGTTCCATCCCTTCATCGCTCGGGGTTCTTCTCAATCTGAGAGGGGTTCAACTCTTCAACAATAGGTTCACAGGGTCCCTCCCTCCTTCATTAGGTTCCTGTCCCTTGCTTCAGTCTTTAGACCTCAGTAACAATCTGCTCAGCGGGACAATCCCGCTGAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGCTTTAATTCCTTCTCTGGTCCAATACCAACTAGCTTAACTCGCTTAACTTCTCTAACTTACATATCTCTTCAACACAACAATCTCTCTGGGTCTATTCCTAACTCATGGGGTGGTAGCTTGAGGAGCCACGTCTTTCGGCTCCAAAATCTGATCCTAGATTATAACTTCTTGAGTGGCACCATTCCTGCTTCTTTGGGCAACTTGAGTGAACTCACAGAGATTTCTCTCAGCCATAACCAGCTTATAGGACCTATTCCAAATGAAATAGGAAGCCTTTCTAGACTTAAGACAGTAGATTTTTCTAGTAATGCATTGAATGGAAGCTTGCCAACCACTCTCTCTAATGTGTCCTCTCTCACTCTGTTGAATGTAGAGAACAACCACCTAGGCAATGAAATCCCAGAAGCCTTAGGCAGGTTGCAGAATCTATCTGTTCTAGTTCTGAGCAGAAACCAATTCAGTGGCCACATTCCTCAGAGTATTGGAAACATGTCAAAGCTTACACAGCTTGATTTGTCAATGAATAATCTCAGTGGAGAAATTCCAGCATCCTTTGAAGATCTGGGTGGTCTTAATTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCAGTTCCAGCCCTGCTTGGGCATAAATTTAATTCGAGCTCATTTGCGGGAAATATTCAACTATGTGGATATAGCCCTTCTACCTTATGTCCCTCGCCAGCTCCTTTTGGTTCACCTAAAGAAATATCAGAGAACCATGGACGCAAGAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTTGTCCTGGTAACACTTTGCTGCATTCTGATATTCTGCCTGATCAGAAAAAGAACAGCATCAAATGCAGAGGGTGGTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCTGCCACGATAGAAAAAGGAGTCCCTCCTGTCGCAGGTGAAGCTGAAGCGGGTGGTGGTGAGGCCGGAGGCAAACTGGTCCACTTTGATGGACCATTGGCTTTTACAGCAGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACGTATGGAACTGTGTACAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTTAAACGATTGAGGGAAAAGATCACGAAAGGTCAGAGAGAATTCGAATCTGAAGTTAGTATCATAGGAAGAATTCGACACCCAAATCTTCTGGCATTGAGAGCCTACTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTATTTGATTACATGCCTAAGGGAAGTCTTGCTTCTTTCCTACATGCTCGTGGGCCCGAAACAGCCATTGATTGGCCAACAAGGATGAAAATAGCACAAGGAATGGTTCGTGGGTTGTTATACCTTCATTCCAATGAGAACATTATACACGGAAACCTTACGTCCAGCAATGTGGTGCTGGATGAGAATACGAATGCTAAAATAGGTGACTTTGGGCTTTCAAGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCTGGGGCATTGGGATACCGAGCACCTGAGCTATCGAAGCTTAAGAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTCGTCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTTTGAATGGCGTGGATTTACCCCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAAGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATATGGCGACGAAATGCTCAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCGTCAGCACGACCAGAAGTTCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCAGAGATATCAGCCAGTTCGGGTGACGATGGAGCCATCCCTTCCACCAGTGAATGA 2508 0.4565 MGSKNLSSKCFFYHKHFQNGVRNHFLRLFLLSWFIVVAVFGEERWDGVVVTQSNFLALQAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGRITDKIGQLQGLRKLSLHDNLIGGSIPSSLGVLLNLRGVQLFNNRFTGSLPPSLGSCPLLQSLDLSNNLLSGTIPLSLGNATKLYWLNLSFNSFSGPIPTSLTRLTSLTYISLQHNNLSGSIPNSWGGSLRSHVFRLQNLILDYNFLSGTIPASLGNLSELTEISLSHNQLIGPIPNEIGSLSRLKTVDFSSNALNGSLPTTLSNVSSLTLLNVENNHLGNEIPEALGRLQNLSVLVLSRNQFSGHIPQSIGNMSKLTQLDLSMNNLSGEIPASFEDLGGLNFFNVSHNNLSGPVPALLGHKFNSSSFAGNIQLCGYSPSTLCPSPAPFGSPKEISENHGRKKLGTKDIILIVAGVLLVVLVTLCCILIFCLIRKRTASNAEGGGQATGRASASAATIEKGVPPVAGEAEAGGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVSIIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETAIDWPTRMKIAQGMVRGLLYLHSNENIIHGNLTSSNVVLDENTNAKIGDFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVVLLELLTGKPPGEALNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDGAIPSTSE 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02392 835 Gene3D Ribonuclease Inhibitor 54 164 IPR032675 -
Viun8g02392 835 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 253 816 - -
Viun8g02392 835 PRINTS Leucine-rich repeat signature 169 182 - -
Viun8g02392 835 PRINTS Leucine-rich repeat signature 267 280 - -
Viun8g02392 835 FunFam Leucine-rich repeat receptor-like kinase 53 165 - -
Viun8g02392 835 FunFam Leucine-rich repeat receptor-like protein kinase 530 621 - -
Viun8g02392 835 FunFam Pollen receptor-like kinase 1 622 826 - -
Viun8g02392 835 SUPERFAMILY Protein kinase-like (PK-like) 549 817 IPR011009 -
Viun8g02392 835 Pfam Leucine rich repeat 341 400 IPR001611 GO:0005515
Viun8g02392 835 Pfam Protein tyrosine and serine/threonine kinase 548 813 IPR001245 GO:0004672|GO:0006468
Viun8g02392 835 Gene3D Ribonuclease Inhibitor 165 241 IPR032675 -
Viun8g02392 835 Gene3D Phosphorylase Kinase; domain 1 551 622 - -
Viun8g02392 835 Gene3D Transferase(Phosphotransferase) domain 1 623 827 - -
Viun8g02392 835 SMART LRR_typ_2 363 386 IPR003591 -
Viun8g02392 835 SMART LRR_typ_2 214 237 IPR003591 -
Viun8g02392 835 SMART LRR_typ_2 118 142 IPR003591 -
Viun8g02392 835 SMART LRR_typ_2 315 339 IPR003591 -
Viun8g02392 835 SMART LRR_typ_2 267 291 IPR003591 -
Viun8g02392 835 ProSiteProfiles Protein kinase domain profile. 545 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02392 835 SUPERFAMILY L domain-like 91 428 - -
Viun8g02392 835 Pfam Leucine rich repeat N-terminal domain 56 92 IPR013210 -
Viun8g02392 835 CDD STKc_IRAK 551 816 - -
Viun8g02392 835 Gene3D Ribonuclease Inhibitor 242 436 IPR032675 -
Viun8g02392 835 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 239 435 - -
Viun8g02392 835 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 166 238 - -
Viun8g02392 835 MobiDBLite consensus disorder prediction 816 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02392 Viun-Chr8 33789109 33792317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02392 45 818 Receptor kinase-like Gene Family AT3G51740 63.846 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Viun8g02392 PK_Tyr_Ser-Thr 9.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02392 - - gmx:100811174 1352.81