Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02389 ATGGGTGCTTATGATCAAGTTTCTGTGCGGCCTTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGTTCTAGATCTGTGGCTGAGACCATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCAGGCAAAGATGATGGTAGATCAACTCGGAAGGCACCAGCTAAAGGTTCAAAGAAAGGATGCATGAAAGGGAAAGGAGGACCTCAGAACTATGAGTGTAACTACAGAGGAGTTAGGCAGAGAACTTGGGGGAAATGGGTGGGTGAGATTAGGGAGCCGAATAGAGGGAGTAGGCTTTGGTTAGGAACCTTTTCTACTGCTCAAGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCCATGTATGGTCCATGTGCACGCCTCAACTTCCCCAACATCTCAGATTATGCTTCTGTTAAGGAATCGTTTAAGGACTCTTTCTTGGCTGCTTCATCTTCATGTTCTTCGACAACATCAGACACTACTACTACTACTACATCAAACCGATCAGAGGTCTGTGCGGCTGAGGATGCTAAGGAGAATGTTCTACCTGCCCTTGATAAGGGCAACCATAGTGATTGTCACAAGGCTTATGAATATGCCTCACCAACTAGCAGAATGAAGCTAGAGCCGAAGGATGATGAGGCTGGAGAAGGAATAATACATCATGCTGAGCAGGCAGAAAATGTAAATGAAGACCAGATGGACTTTTCATGGATTGATGCTTTGGATTTCAATGATGATTACTCCAAGAGCTTTTCCAATGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCTAATAGAGAACAACCCAGTTGATGATTCTGGATTGATGCAAGGTTTGGATTTTGGACAAACAGGATTTCCTGGAGAAAGTAATCCTCAGGTTGATGATACGTCATCAAGCTTTTTTTATCAGTTGCAAAATCCAGATGCCAAGTTGTTGGGAAGTTTGCCCCATATGGAACAGACACCATCTGGTTTTGATTATGGATTAGATTTCATGAAAACAGTTGTGCCAGAGGACTATGATGGTGGAGGGGAAGAACCGCAGTTCCTTAATTTGGACGATGTTCTGAACCATGATTCAAAGGAAATGGTAGCAAGCAAGGAATGA 1134 0.4347 MGAYDQVSVRPLDSSRKRKSRSRGDGSRSVAETIAKWKEYNEHLYSGKDDGRSTRKAPAKGSKKGCMKGKGGPQNYECNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPNISDYASVKESFKDSFLAASSSCSSTTSDTTTTTTSNRSEVCAAEDAKENVLPALDKGNHSDCHKAYEYASPTSRMKLEPKDDEAGEGIIHHAEQAENVNEDQMDFSWIDALDFNDDYSKSFSNDELFQVDELLGLIENNPVDDSGLMQGLDFGQTGFPGESNPQVDDTSSSFFYQLQNPDAKLLGSLPHMEQTPSGFDYGLDFMKTVVPEDYDGGGEEPQFLNLDDVLNHDSKEMVASKE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02389 377 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Viun8g02389 377 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Viun8g02389 377 MobiDBLite consensus disorder prediction 1 31 - -
Viun8g02389 377 SUPERFAMILY DNA-binding domain 79 136 IPR016177 GO:0003677
Viun8g02389 377 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Viun8g02389 377 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Viun8g02389 377 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 334 - -
Viun8g02389 377 MobiDBLite consensus disorder prediction 11 26 - -
Viun8g02389 377 MobiDBLite consensus disorder prediction 45 70 - -
Viun8g02389 377 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Viun8g02389 377 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Viun8g02389 377 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Viun8g02389 377 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02389 Viun-Chr8 33766181 33768468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02389 16 362 AP2-EREBP Transcription Factor Family AT2G40340 40.278 4.69e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g02389 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02389 - K09286 gmx:100800134 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02389 8 33766181 33768468 Viun8g02389 8 33766181 33768468 ECH