Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02387 ATGGTGAACAGAAAAAGACGATTAGATCAAATCAAGCATCCATTCAACTCTCACCCTTTTGAAGCAGTTTCCTCTGGATCATGGCAAGCTGTGGAGTTCATAAAGATTGAGGCAGGAACCATGTATATTCATTTTGTTGATAATCATTATATGCCAATGGAGAAAGGACCCTTGTCAGACATTCGGATAAGGTCTAGAAAGGCTACTTTATCTGATTGTTCCCGTTTTCTGCGTCCTGGAATTGATATATGTGTGCTCTCTACCCCTCAACGATCTAATGATTCAGATGCAACAGTTGTTGACCCTGTTTGGATTGATGCTAAAATAAGCTCTGTACAAAGAAAACCACATGACTCTGAGTGCTCCTGTCAGTTTTATGTCAATTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGCTAAGAACTCTTAGCAAGGAGATTAAAGTAATTGGACTCAAACAAATATCCATTCTCCAGAAACTTGACAACATTTACTGTGAAGATCAGCACTACCGGTGGGCATCATCAGAGGACTGTTCCATGATATCACACACTAAATTACTTTTGGGCAAAGTGCTATGTGATCTTTCATGGTTAGTTGTCACCTCAGTTGTAAAGAGGATTTCATTTTGCGTAAGATGTCTAGAAGAAAAGCTAGTGTATCAAATTTTGGGAAGAGATACTGATAGCACTTCATTGAATCAAGATTCTTACATTGATGTTGTGAATTTCAAAACAGAAAGTGGCGTGTTAGTACCCTTTGTTTCTCAAGTTCCTACAGTTATAACTAAGCAGATTGATAACGTACATGAATGCCATGAAGATCAGCTGTTACTACTACCTTATAATGTTGAGGGCTTGCGGCGTTCTAAGCGTAGGAATGTACAACCAGAGCGTTACATTGGTAGTGTTAATGTATCTTCCGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCAGTGAAGATAGACACATGGAAAGAACAGGACGATGAAGAACTGCATATACCACTGGCATGTCTGTTTGGTTTGGTGAAGAACTCTCCAGAAGGGGTTAATGAAAATCATGAAAAGAAGGCAAGCACATGCCGGGAGCTTGTGATGTATAAGAGGAGAATGAACACTAACCAGGAGATAAAGTCAGGAGAAAATTATCAGAATGAAGATCAAAATCGGCTTGCTATTGTTCCTCTTCCTGATCAAGTTGATCCGTTACTTGTTGAGCATTGTGATGATTTAGATGACAAGGTTACTAGAAGTTATGGTCATGAATCCCCTGAACATTATTCCAAATATTATGATCTAACTAGTGCCCCCAAGAAATCAAAGAAGAAAGATGATAATTTGTTAGCTTTTGAGACTCAAAACCATCCTGCAGAGTCTGATGATGTAGAAAAGGCTGATGATTTGTCATTGAGATATCATTATAGTTATGGTGTCCCCAAGTCAAAGAGGAAGAATTTAAGTGGTTTAGATGATATAGTGGATCTTGGAAATAAATGGGAAGGGATTAGATCCAATAAAGAAGCTCAAAAGAAAAAATTCCATGCATCTTATTCAAGAAGTAGAGATCATGGAGAAGAAAAAAGGTACAACTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATCTCATAAATTCGTACTTAAAGAATATTAATACAATATCTACTCAAGAAGAACCATCTATAACTGACCAGTGGAAGGAAATCAACACAACTAGTAGCATTGGGCAAAAGACAGAAACAGAAAATCCTGATGAAGAAGATGCAGAAGAAGAATCTGAAATGGATATGTTGTGGAGAGAATTGGAAGTGTCATTGGCGTCTTCCTATCTAGAAGAGGATTCAAATGCTGCTATTATCAATGAAACTGAGGAAAAACCGAACCAAGGCTGTCCACATGAGTTCAGAATGAATGAACAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAAAACTGAGATCAAATATATTACTCCACCATTTATTCAACATTCTTCATGGCACCAAGAGGAGAAGCACAGTGCTGAAGAAGATTCACGAACAAAGGTTGATGAGGATGATGACTTGGATCTTTTCCCCACCATAGAATCTCCTGAGGGACCTGTGTCTCAAGAAAATGATAACGTTTGGGCATTGATTCCCGAACTTAGAGTAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGAACCAACACTGATGGAAGCAGCATCCAAAAAAATAGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTTCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGACGTAGAACATACCGGGTTTTCAAGCAGAAATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCACTCACACCCCAGTGTTCTGATAATGGGTTATACTTCATTTTTAACACTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTGCTGAGGGAAAGCCCGGGGATCATGGTTCTGGACGAAGGGCACAACCCCAGAAGCACTAAATCAAGGCTGAGAAAGGTTCTGATGAAAGTTCAAACAAAACTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTTTGTGCTTGGCAAGACCAAAGTTCATTCATGAAGTACTGAAAGCATTGGACTCCAAATACAGAAGGAAAGGAAAAGTAGCAAAAAAGGCAAGTCATTTATTAGAATCACGAGCTAGAAAATTCTTCTTAGACAAAATTGCTAAGAAAATTGACTCTGATAAAGGTAGGGAGAGGCAGCAGGGTCTGAAGATGTTGAGAAATGTGACAAACGGATTCATAGATGTTTATGAAGGAGGAAGCTCTGACGGTCTACCAGGTTTACAAATTTACACATTGTTAATGAATTCATCTGATACACAGCATGAGATTTTGCTTAAACTACACAAGAAAATGGCCAAGTGCAATGGTTACCCTCTGGAATTAGAACTTATGATAACTCTTGGTTCGATACATCCATGGCTGGTGAAAACAGCAGTGTGTGCTGAGAAGTTTTTCACTTCTGAGCAACTGATGGAGCTAGAAAAATGCAAATTTGACCTGAAAATAGGGTCCAAGGTAAGATTTGTGTTGAGCCTTATCTACCGTGTTGTGAAAAACGAGAAGGTTCTGATATTTTGCCACAACATTGCACCGGTGAAGCTATTTGTGGAATATTTTGAGAAGTACTTTGGGTGGATGAGAGGAAAAGAAGTGTTGGTGCTAACTGGGGAATTAGAACTGTTTGAAAGAGGGAGAGTAATGGATAAGTTTGAGGAAGCTGGTGGAGTAGCAAAGATACTTCTTGCTTCTATAACAGCTTGTGCTGAAGGTATTAGTTTGACAGCAGCTTCAAGAGTTATTATGTTGGATTCAGAGTGGAATCCTTCAAAAACGAAGCAAGCCATTGCTAGGGCTTTTCGACCTGGTCAGCAGAAAGTTGTGTATGTGTATCAGCTTTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTCAGTGAGGCCTTTGTGGAAGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCTGAAGATAAGTCTAAATCATTCCACATGATCATGAAGAATGAAAAAGCTTCTTCCACCAACAAATAA 3921 0.393 MVNRKRRLDQIKHPFNSHPFEAVSSGSWQAVEFIKIEAGTMYIHFVDNHYMPMEKGPLSDIRIRSRKATLSDCSRFLRPGIDICVLSTPQRSNDSDATVVDPVWIDAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVIGLKQISILQKLDNIYCEDQHYRWASSEDCSMISHTKLLLGKVLCDLSWLVVTSVVKRISFCVRCLEEKLVYQILGRDTDSTSLNQDSYIDVVNFKTESGVLVPFVSQVPTVITKQIDNVHECHEDQLLLLPYNVEGLRRSKRRNVQPERYIGSVNVSSEIDVGSFRNRPPVKIDTWKEQDDEELHIPLACLFGLVKNSPEGVNENHEKKASTCRELVMYKRRMNTNQEIKSGENYQNEDQNRLAIVPLPDQVDPLLVEHCDDLDDKVTRSYGHESPEHYSKYYDLTSAPKKSKKKDDNLLAFETQNHPAESDDVEKADDLSLRYHYSYGVPKSKRKNLSGLDDIVDLGNKWEGIRSNKEAQKKKFHASYSRSRDHGEEKRYNYKDRTLNAAAYKDLINSYLKNINTISTQEEPSITDQWKEINTTSSIGQKTETENPDEEDAEEESEMDMLWRELEVSLASSYLEEDSNAAIINETEEKPNQGCPHEFRMNEQIGIYCYRCGFVKTEIKYITPPFIQHSSWHQEEKHSAEEDSRTKVDEDDDLDLFPTIESPEGPVSQENDNVWALIPELRVKLHAHQKKAFEFLWQNIAGSMEPTLMEAASKKIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDSKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSDKGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSSDTQHEILLKLHKKMAKCNGYPLELELMITLGSIHPWLVKTAVCAEKFFTSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFVEYFEKYFGWMRGKEVLVLTGELELFERGRVMDKFEEAGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDKSKSFHMIMKNEKASSTNK 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02387 1306 SMART ultradead3 720 954 IPR014001 -
Viun8g02387 1306 Pfam SNF2-related domain 731 992 IPR000330 GO:0005524|GO:0140658
Viun8g02387 1306 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1302 IPR044567 GO:0080188
Viun8g02387 1306 Gene3D - 703 991 IPR038718 -
Viun8g02387 1306 Gene3D - 1030 1306 IPR027417 -
Viun8g02387 1306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1110 1271 IPR001650 -
Viun8g02387 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 894 1262 IPR027417 -
Viun8g02387 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 962 IPR027417 -
Viun8g02387 1306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 749 949 IPR014001 -
Viun8g02387 1306 Pfam Helicase conserved C-terminal domain 1107 1223 IPR001650 -
Viun8g02387 1306 CDD DEXHc_ATRX-like 724 954 - -
Viun8g02387 1306 CDD SF2_C_SNF 1099 1235 - -
Viun8g02387 1306 SMART helicmild6 1135 1224 IPR001650 -
Viun8g02387 1306 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02387 Viun-Chr8 33747420 33754471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02387 1149 1242 RAD5 or RAD16-like Gene Family AT5G43530 40.426 2.06e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun8g02387 SNF2_N 5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02387 K10875 - gmx:100811703 2153.25