Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02382 ATGGGTGGAAGTTCTCCTTGCGCCTCTTGCAAATTGTTGAGACGCAGGTGCTCAAAAGATTGCATCTTCGCTCCGTATTTTCCCTCTGATGAACCTCAAAAGTTTGCCATTGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCTGTTCATCAAAGAGCAGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAGTGAGAGATCCTGTGTATGGTTGCGTTGGAGCCATTTCCTATCTGCAAAATCAAGTTGCTGATCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACTCTGCATTCAGATGAAAAATGAATCACTGATACCACCCTCAGAAACTGATCTACACCAGAAGTCTTATCTTCTTCAGAATAATTTCCCTCACTTACTAGATTTTAACACTTCCAACAGTGTAGTTCACTGTTCCCCTAATCATGTTACACAATGA 474 0.4156 MGGSSPCASCKLLRRRCSKDCIFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLQMQLAVAQAEILCIQMKNESLIPPSETDLHQKSYLLQNNFPHLLDFNTSNSVVHCSPNHVTQ 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02382 157 Coils Coil 85 105 - -
Viun8g02382 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Viun8g02382 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 128 - -
Viun8g02382 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02382 Viun-Chr8 33704050 33704998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02382 3 114 AS2 family AT2G30130 91.071 4.53e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun8g02382 LOB 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02382 - - gmx:100812780 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03258 1 40271502 40272583 Viun8g02382 8 33704050 33704998 ECH
Viun8g02382 8 33704050 33704998 Viun8g02382 8 33704050 33704998 ECH
Viun1g03258 1 40271502 40272583 Viun8g02382 8 33704050 33704998 PCT