Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02366 ATGAATGATGTTGTTCTGTCTGCTATGATGGTCTCCCAAGGCTTTTTACCATCTGGGTCTCTGCTAGATTCTTTGATTCACATATCCAAAGAAGTTGATTCAACGGAAAAGTTTCCCTTCGTACACATAAGAAACGTTTCATCCATGATCAGAAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAATCGGGTACTCCACTTCCTCCTTCTTCAATCCTGTGTCTCACGGAACTCTTCTCTGTGATAAGAAGAGTTAAGGTTCTGATCCAAGACTGCAAAGATGGAAGCTCTCTTTGGAGTCTGATACAGTTAGAGTTCATCTCCAACCAGTTTTATGTGCTGGTGAAGGAAATGGGAAGAGCACTTGATATTCTTCCCTTGAGTTTGCTCAATGTAACATCTGATATTAGGGAACAAGTTGAGCTTCTTCACAAGCAAGCAAAGAGGGCTGAGTTACTCATCGATCCTAGAGAGCTTCAACGAAGAGAACAACTCAAGCAAGCAATGGCCAACAACAGTTCAATGAAGAAGAAGAACAAAGGGTTTGTTGATTTTGGAAAAGTGGAAGAAATACTCAGCAGCATTGGTCTGAGAACCCCATCAGATTATGATGGAGAAATATCAAAGTTGGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTCATCATTGTCTCCAACATAAACAACCTCATATCGTTGGTGTCTTGTTCCAAATCCATGATATTCAGAGATGGAGAGAGTGGTAGAAATGAAGAACATTGTAAACCACTATCTTCGTTTTTGCATAACAAAGTTCATGATAGTTCTTCATCTTCTCAGTCCATGACACCCAATGTTCCTGATGAATTTCGTTGCCCAATAACACTTGACTTAATGAGAGACCCTGTGATTGTGTCATCCGGGCACACATATGATAGAACATCAATTGCACAATGGATAAACTCTGGTCATCACACATGCCCCAAAAGTGGACAAAGGTTGATTCACACTGCTTTAATACCCAACTACGCATTGAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTCCCGGTTAATGAGGCTACGACCGAAGGAAACAACCACACGAAGAAGAAGAAGAACACGAAGGAGGAGGCCATCGACCATATTTCTGCAAACAAAGCTGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTCGGAAAATTGGCAACTGGGTCTGCTGATATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGGTTAACCGGAGTGTCATAGCTGAAGTGGGGGCCATTCCCTTTCTGGTAACACTTCTGGGATCTCAAGATTCAAGAATTCAAGAGCATGCAGTGACAACGTTGTTCAACCTCTCCATATTTGACAACAACAAGATTTTGATAATGGCAGCAGGAGCAGTAGATAGCATAGTGGAAGTACTTGAATCAGGGAAGACGATGGAGGCAAGGGAGAATGCAGCAGCAGCAATATACAGCTTGTCTATGGTGGATGAACTCAAAGTGCAGATTGGAGGAAAAGCAAGGGCAATACCTGCATTAGTAAGACTCTTGAAAGAAGGCACTTCAATAGGGAAAAAAGATGCTGCATCTGCACTGTTCAATCTTGCAGTTTACAATCCCAACAAGGTTAGTGTTGTTAAGGGTGGTGCAGTTGCTGTGCTGGTGGAACTGCTGATGGATGACAAGGCTGGAATAACAGATGATGCACTTGCAGTGCTTGCTTCACTTCTTGGTTGCTCTGAAGGGTTGGAAGAGATAAGAAACAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTGTGCAAAGAAGAGGGTGAAGTGGTGGCAAGAAGGCTCTTGGCAAATCCAAGAAGTGTTCCTTCTCTTCAAAGCTTGGTTTGTGATGGATCTTTGAGAGCTAGAAGAAAAGCAGATGCACTTCTCAGACTCCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2061 0.4284 MNDVVLSAMMVSQGFLPSGSLLDSLIHISKEVDSTEKFPFVHIRNVSSMIRRIKLLSSLFEEIQESGTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIREQVELLHKQAKRAELLIDPRELQRREQLKQAMANNSSMKKKNKGFVDFGKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIIVSNINNLISLVSCSKSMIFRDGESGRNEEHCKPLSSFLHNKVHDSSSSSQSMTPNVPDEFRCPITLDLMRDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNEATTEGNNHTKKKKNTKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAAAIYSLSMVDELKVQIGGKARAIPALVRLLKEGTSIGKKDAASALFNLAVYNPNKVSVVKGGAVAVLVELLMDDKAGITDDALAVLASLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSVPSLQSLVCDGSLRARRKADALLRLLNRCCSQPHHSV 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02366 686 SUPERFAMILY ARM repeat 397 675 IPR016024 -
Viun8g02366 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 364 IPR013083 -
Viun8g02366 686 Gene3D - 390 514 IPR011989 -
Viun8g02366 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Viun8g02366 686 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Viun8g02366 686 PANTHER U BOX DOMAIN-CONTAINING 45 680 - -
Viun8g02366 686 FunFam RING-type E3 ubiquitin transferase 492 679 - -
Viun8g02366 686 FunFam RING-type E3 ubiquitin transferase 283 357 - -
Viun8g02366 686 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Viun8g02366 686 Pfam Armadillo/beta-catenin-like repeat 429 465 IPR000225 GO:0005515
Viun8g02366 686 Pfam U-box domain 284 354 IPR003613 GO:0004842|GO:0016567
Viun8g02366 686 SUPERFAMILY RING/U-box 272 358 - -
Viun8g02366 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Viun8g02366 686 Gene3D - 515 675 IPR011989 -
Viun8g02366 686 SMART arm_5 592 633 IPR000225 GO:0005515
Viun8g02366 686 SMART arm_5 551 591 IPR000225 GO:0005515
Viun8g02366 686 SMART arm_5 385 424 IPR000225 GO:0005515
Viun8g02366 686 SMART arm_5 467 508 IPR000225 GO:0005515
Viun8g02366 686 SMART arm_5 510 550 IPR000225 GO:0005515
Viun8g02366 686 SMART arm_5 426 466 IPR000225 GO:0005515
Viun8g02366 686 CDD RING-Ubox_PUB 285 337 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02366 Viun-Chr8 33567007 33569204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02366 19 681 U-box Gene Family AT3G46510 37.668 3.66e-125 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02366 - - gmx:100793498 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02366 8 33567007 33569204 Viun8g02366 8 33567007 33569204 ECH