Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02363 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGCCACCACCGCCACGCCCTCCACTCCCAGCCAAACATCTAACACCTCCAATGACACCAAAACCGCTCGTAAATGCAAAGGCAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACGCGCAAGTGGCTCGGCACCTTCTCCACCGCAGAAGACGCCGCCAGAGCCTACGACCGCGCCGCCCTCATCCTCTACGGTTCCCGTGCCCAGCTTAATCTCCAACCCTCCGGTTCCTTTTCCCACTCCCCCTCCTCCTCCTCCTCTCGTACCACCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCTCCGGCTTCGCTTTCAATTTCCCCTTCCACGCCGCCGCCCTGCCCTACCCTTGCGCCGCCGCGTATACCACCACCTTCAATTACACCGCGCAGGCTTTGCGCCCTAATGAGAATAGTAATAATACAGTGCATGCCCATCATCGTCATCATCAAGTGGTGCAAATGCCGCATGCTCTATCAACATCATATCAAAATTCGGAATCCGATGTGAGTTTAGGTGGGAATAACACCACTGTCGATAGCTCTAGTAGATCAACCTCGTACCAAAAACATGGTTTCCAGGATAATAACCGTTTGCATGTGCAACCCGACGATTCGCCGAATCATCGGCAACATCAGAACGGGGATGTCGATGTCGACGGAGTGAATTCCGTTGTGGGTTCGGAAGAAGCGAATATGGAGGCTTCTGAGGATCCGGATCTGTCGTTGGTGGGGACGGTGGGGCTTGGATCTTCTTCGTCTTTGTGGCCTTTGGCGAATGATGATGATTACAGTGGTAGTTTGTGGGATTATAATGATCCTATCTTCTTTGATCTTTAG 960 0.5385 MASLQPQPQETKPTATTATPSTPSQTSNTSNDTKTARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAALILYGSRAQLNLQPSGSFSHSPSSSSSRTTSSSSTQTLRPLLPRPSGFAFNFPFHAAALPYPCAAAYTTTFNYTAQALRPNENSNNTVHAHHRHHQVVQMPHALSTSYQNSESDVSLGGNNTTVDSSSRSTSYQKHGFQDNNRLHVQPDDSPNHRQHQNGDVDVDGVNSVVGSEEANMEASEDPDLSLVGTVGLGSSSSLWPLANDDDYSGSLWDYNDPIFFDL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02363 319 FunFam Ethylene-responsive transcription factor 2 51 109 - -
Viun8g02363 319 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Viun8g02363 319 MobiDBLite consensus disorder prediction 109 135 - -
Viun8g02363 319 MobiDBLite consensus disorder prediction 242 256 - -
Viun8g02363 319 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 274 - -
Viun8g02363 319 MobiDBLite consensus disorder prediction 1 34 - -
Viun8g02363 319 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Viun8g02363 319 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Viun8g02363 319 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Viun8g02363 319 MobiDBLite consensus disorder prediction 199 241 - -
Viun8g02363 319 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Viun8g02363 319 MobiDBLite consensus disorder prediction 1 53 - -
Viun8g02363 319 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Viun8g02363 319 CDD AP2 51 108 IPR001471 GO:0003700|GO:0006355
Viun8g02363 319 MobiDBLite consensus disorder prediction 35 53 - -
Viun8g02363 319 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Viun8g02363 319 MobiDBLite consensus disorder prediction 199 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02363 Viun-Chr8 33531360 33532679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02363 37 319 AP2-EREBP Transcription Factor Family AT2G40220 42.208 5.68e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun8g02363 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02363 K09286 - gmx:100779779 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02363 8 33531360 33532679 Viun8g02363 8 33531360 33532679 ECH