Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02362 ATGTCGATTCGCGATTCCGAATCCTTCAATTGGCACTACGACGCAGAGCTCGACGACCAGAGCCTCCATTTCCGCGGCCACAAGCTCTTCTTCATCATCGTCATTTTCTCGATCGTCTTCCTCTTCACCGCGCTCTTCATCTTCGCTCGACGGATCTGCCGCCACCACGGCCTCCTCTTCGAAGCCGTCCCACCGCACCAGGCGTCGCCGATGCTTCCTTCTCAGGACGGGCTCGACGCCGACGCGATCAAGCGGCTACCGATCATCCTGCACCAGCGCGCGGCGGCGGAGGAGTCGGAGTGCTGCATCTGCCTCGGCGCGTTCGTCGATGGCGCGAAGCTGAAGGTTCTCCCTGGATGCGAACACAGCTTCCACAGCGAGTGCGTTGACAAGTGGCTGGCGAATCACTCCAATTGCCCTCTCTGCAGAGCATCGGTGAAACTCGATCCTTCGTTACCGAGGATTTTGATCCAATCGCCACCCGTTAGAACAACTATTCCTGTCTGA 507 0.5858 MSIRDSESFNWHYDAELDDQSLHFRGHKLFFIIVIFSIVFLFTALFIFARRICRHHGLLFEAVPPHQASPMLPSQDGLDADAIKRLPIILHQRAAAEESECCICLGAFVDGAKLKVLPGCEHSFHSECVDKWLANHSNCPLCRASVKLDPSLPRILIQSPPVRTTIPV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02362 168 SMART ring_2 101 142 IPR001841 -
Viun8g02362 168 Pfam Ring finger domain 100 143 IPR001841 -
Viun8g02362 168 SUPERFAMILY RING/U-box 88 151 - -
Viun8g02362 168 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Viun8g02362 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 148 IPR013083 -
Viun8g02362 168 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02362 Viun-Chr8 33519107 33519855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02362 11 151 C3H Transcription Factor Family AT3G11110 40.816 7.46e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02362 - - gmx:100794554 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03239 1 40176416 40177709 Viun8g02362 8 33519107 33519855 PCT