Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02360 ATGGAAAGTTACCACTATTCTGGGTGGCCTCTTCCCACCAACATGCCTCACTGCAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCACTCCCTCTTGCTTCTTCTGACCCTCCATCTCTTCAGTTTAGTGATTTCCCTTTGTGGCCTGCAACCATTGCAGAAGATAAAGATAGAGTTGCAAGTGCTTCAAAGAGTCACAGCCAAGCAGAGAAAAGACGCCGAGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCATGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGAGCATGTGAAAGATCTAAAGCGAAAAGCCATGTGTGTGAGCAAAGCCATAACTGTTCCAACAGAAACCGATGAAGTAACAATTGAGTTCCACGAAGCTGAAGATGAAAGCTTCAGAAAAGTGAAGATATGGAAGGAGAAGATCATAATCAAAGCTTCTGTGTGCTGTGATGATCGACCTGAAGTGTTTCCTGAGCTCATCCAAGTTCTGAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCTAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGACAGTGATGACAACAGTGTTTGCCTCACCACTCTCAAACACTCACTTAAATCTGCTGTCAACAAAATTGCTTCGTTATCTGTGGCCACTAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCGCATTACGTACACCCATAA 765 0.4392 MESYHYSGWPLPTNMPHCNSAPNSDQLSPFSLPLASSDPPSLQFSDFPLWPATIAEDKDRVASASKSHSQAEKRRRDRINAQLATLRKLIPMSDKMDKAALLGSVVEHVKDLKRKAMCVSKAITVPTETDEVTIEFHEAEDESFRKVKIWKEKIIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSDDNSVCLTTLKHSLKSAVNKIASLSVATNCPTRSKRQRFFFPSHYVHP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02360 254 Gene3D - 57 119 IPR036638 GO:0046983
Viun8g02360 254 CDD bHLH_AtAIG1_like 59 136 - -
Viun8g02360 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 116 IPR036638 GO:0046983
Viun8g02360 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Viun8g02360 254 PANTHER TRANSCRIPTION FACTOR BHLH30 55 249 IPR045847 GO:0003700|GO:0006355
Viun8g02360 254 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
Viun8g02360 254 SMART finulus 69 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02360 Viun-Chr8 33492284 33494019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02360 59 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.525 2.80e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g02360 HLH 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02360 - - gmx:100306102 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02360 8 33492284 33494019 Viun8g02360 8 33492284 33494019 ECH
Viun1g03238 1 40164059 40165882 Viun8g02360 8 33492284 33494019 PCT