Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02359 ATGGAAAGTTACCACTATTCTGGGTGGCCTCTTCCCACCAACATGCCTCACTGCAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCACTCCCTCTTGCTTCTTCTGACCCTCCATCTCTTCAGTTTAGTGATTTCCCTTTGTGGCCTGCAACCATTGCAGAAGATAAAGATAGAGTTGCAAGTGCTTCAAAGAGTCACAGCCAAGCAGAGAAAAGACGCCGAGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCATGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGAGCATGTGAAAGATCTAAAGCGAAAAGCCATGTGTGTGAGCAAAGCCATAACTGTTCCAACAGAAACCGATGAAGTAACAATTGAGTTCCACGAAGCTGAAGATGAAAGCTTCAGAAAAGTGAAGATATGGAAGGAGAAGATCATAATCAAAGCTTCTGTGTGCTGTGATGATCGACCTGAAGTGTTTCCTGAGCTCATCCAAGTTCTGAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCTAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGACAGTGATGACAACAGTGTTTGCCTCACCACTCTCAAACACTCACTTAAATCTGCTGTCAACAAAATTGCTTCGTTATCTGTGGCCACTAATTGTCCCACTAGAAAAGCAGAGATGATTTATGAGATGCAGCAATCAGCAGTGATAGCGTTGTACATGAGGACCACACCCTTAATTAGAGCACTGTTTCACAAAAGCAACGTACACTAA 822 0.4343 MESYHYSGWPLPTNMPHCNSAPNSDQLSPFSLPLASSDPPSLQFSDFPLWPATIAEDKDRVASASKSHSQAEKRRRDRINAQLATLRKLIPMSDKMDKAALLGSVVEHVKDLKRKAMCVSKAITVPTETDEVTIEFHEAEDESFRKVKIWKEKIIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSDDNSVCLTTLKHSLKSAVNKIASLSVATNCPTRKAEMIYEMQQSAVIALYMRTTPLIRALFHKSNVH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02359 273 Gene3D - 57 119 IPR036638 GO:0046983
Viun8g02359 273 CDD bHLH_AtAIG1_like 59 136 - -
Viun8g02359 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 116 IPR036638 GO:0046983
Viun8g02359 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Viun8g02359 273 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
Viun8g02359 273 PANTHER TRANSCRIPTION FACTOR BHLH30 55 240 IPR045847 GO:0003700|GO:0006355
Viun8g02359 273 SMART finulus 69 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02359 Viun-Chr8 33492030 33494978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02359 59 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 46.552 3.80e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g02359 HLH 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02359 - - gmx:100306102 346.665