Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02344 ATGTGTAGTGATTCAAAGAGTAAGCTTTCGTCGTCCCCGAGCCTCGTGATGGAGAACAATCTTCAGAAGCAGAATCTTGATGGTTTCTGCAACTTCTCGACTTTACTTGAACTGTCTGCTTGCGATGATTTCGAAGCTTTCAAAAGAGAAGTAGACGAGAAGGGCGTAGATGTCAACGAGTCTGGCTTTTGGTATGGGAGAAGGATTGGGTCAAAGAAGATGGGATCTGAAACCAGGACCCCCCTCATGATTGCTTCTTTGTTTGGGAGCACTAGGGTTCTCAAGTATATTCTCGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCCACTGCTCTTCATTGTGCTGCCTCCGGAGGCTCTGAATCTTCACCTGAGATCGTCAAGCTTTTGCTAGATGCCGGGGCTGATGCTGAATCCCTTGATGCTAGTGGAAACAAACCCGCTAATCTGATTGCTCCTGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCATGGAGTTGCTCCTCCGGGGCGGCGGCGAAAGAGATGAAGTGGTGAGCCAGGAGATGGAGCTGCAGATGTTGGCCACTCCCTTCAAAGAAGGTGCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCCGTTGATATATCCTTGCCTGATATCAACAACGGTGTGTATGGATCAGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTACTCCCACGACTGGACCGAGTGTCCGTTTGTTCATCCCGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCCGAATTCCGCAAAGGGACCTGCCAGAAAAGTGATTCCTGCGAGTATGCTCACGGTGTTTTCGAGTCCTGGCTCCACCCTGCCCAGTACAGAACAAGGCTATGCAAGGACGAGACTGGCTGCACCAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACCGGCTCAGCCATGCCCTCACCAAAATCCTATTCAACCACTGCACTAGACATGACATCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTGCCCATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCAAAGAGTGGAAACTTGTGGCAGAACAAAATCAACCTCACTCCACCATCACTTCAGCTCCCAGGTAGCAGACTCAAGGCTGCTCTGAGTGCTAGGGATCTGGAGATGGAGATGGAACTTCTCGGTCTGGATAGTCCAGCACGCCAACAACAGCAGCAGCAGCAACAGTTGATAGAGGAGATTGCCAGAATCTCTTCACCGTCTTTCCGCAACAAGGAATTCAACAGGATCGCTGATTTGAATCCAACCAACCTTGATGATCTCTTAGCCTCTGCTGACCCTTCTGTGCTATCACAGCTACACGGACTTTCTGTGCAATCTTCAACACCTTCCCAAACTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCGGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAACTCCAGGTCCGCCGCCTTCGCCAAGCGAAGCCAAAGTTTCATCGATCGTGGCGCTGCAACCCACCATCTCGGCCTGTCCTCACCCTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTCTCGGATTGGAGTTCCCCTACCGGGAAACTGGATTGGGGTGTGAACGGAGATGAGCTGAACAAGCTGAGGAAATCTGCTTCGTTCGGGTTCAGGAACAATGGGGTAACTGCTTCCCCCATGGCTCAGCATGAACATGTTGAGCCAGATGTTTCGTGGGTTCATTCGTTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGAGAAGCAACAGTATGATCTGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTGGCATGA 2034 0.5108 MCSDSKSKLSSSPSLVMENNLQKQNLDGFCNFSTLLELSACDDFEAFKREVDEKGVDVNESGFWYGRRIGSKKMGSETRTPLMIASLFGSTRVLKYILEAGTVDVNRACGSDRATALHCAASGGSESSPEIVKLLLDAGADAESLDASGNKPANLIAPAFDSSSKSRRKAMELLLRGGGERDEVVSQEMELQMLATPFKEGAEKKEGSDKKEYPVDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKSDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSTTALDMTSMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGNLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLDSPARQQQQQQQQLIEEIARISSPSFRNKEFNRIADLNPTNLDDLLASADPSVLSQLHGLSVQSSTPSQTGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPMAQHEHVEPDVSWVHSLVKDVPSERSEMFGGEKQQYDLLPPWVEQLYIEQEQMVA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02344 677 Gene3D - 31 212 IPR036770 -
Viun8g02344 677 PANTHER UNKEMPT FAMILY MEMBER 37 643 IPR045234 -
Viun8g02344 677 SMART ANK_2a 112 144 IPR002110 GO:0005515
Viun8g02344 677 SMART ANK_2a 77 107 IPR002110 GO:0005515
Viun8g02344 677 Pfam Ankyrin repeats (3 copies) 70 143 IPR002110 GO:0005515
Viun8g02344 677 Gene3D - 272 334 - -
Viun8g02344 677 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Viun8g02344 677 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Viun8g02344 677 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Viun8g02344 677 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Viun8g02344 677 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
Viun8g02344 677 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Viun8g02344 677 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Viun8g02344 677 SUPERFAMILY Ankyrin repeat 31 166 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02344 Viun-Chr8 33381395 33384492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02344 32 672 C2H2 Transcription Factor Family AT5G12850 39.887 3.25e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun8g02344 Ank_2 6.2e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02344 - - gmx:100783376 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02344 8 33381395 33384492 Viun8g02344 8 33381395 33384492 ECH