LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g02342	ATGGCTGTGTCCAACGGCGTCGAAGCAGTGTTAGAGTTTCTGCGGAAGAATGGGTTGTCGGAAGCGGAGTCCGCGCTTCGAGAAGACATCATCGAGAACACCGACCTGGGAAACTTCGACTACGAGAAGTTCTTCTTCCCCATGGTCCCGCCGCCGCCGCCGGTCAGAGTCCGATCCTTCTCCCTACCGTCCGAGCTCGCCGCTGCGGACGAGGACTCCTCCAAATCCAGCTCGGATGAGTTCGTCACCATCGATTCTTCCACTTCTCGCGTCTCGTCTTCAGAATTCGTAAATCCATATGGAATCCGTTCCTCATCACAGACTCAGAATGATTCGGAGTCTTCGTCTGAAAGATTATCTCAGTTTGGCACAGCACGTGATTATCACGATTTCGATATGCAAAATGAACCGTATTGGTATAATGAAAAAGATGATGAATATTTCATGACTCCTAGTTTTGAAGGGCCAGACTATTTTGCGTGTCGGAGTGAAGATAAGTTTGTCATGACAGCAGAAACGGACAACCAACGTGACAATTCTCTGAATCTTGATTACAACTACGAAGAATTTCAACTAAAGGGGAATGGTAATGGTAATGGTGGTTACATGGACAAGGCATGCCTCGATAACCATTCCTCTGTAGTTGATGGAACTGTGACTCATTCAAAAGGGTATTGCCATGTTGATAACAAGGACCAGTTTGAAGGGGAATTAGAGGGTAATGCTGAGAAACCCAGTGTTTCCTGCAGTTGTGAAGTTCCATTTTGCAAAAGCAGTCCTGGTTCTGGAGGTTCTTGCAGTCTGGATCCTACAAACTTCGGCTACCCTAACTTGAAGGAAATCCATCTGAACAATTTTCATTTGGGGGTTGTTGGGGACATTAACTCTTTTGATTCTACTTCAGAGCTAACTCTGAATCAAAATTTTGGCCACTACACTAAAAACGACAGCAGTAAGGAGTACAAGGGTCCTTACGACTTAACTATCGAAGTTACTGATAAAAATCTACCAAATGGACTTGACACCTATAAAGCACAACTTGGTGGAGAATTAACTGAAGACCGTCAAGATCCAGAGTTTGCCGCAGATGAAGAGGATACAACTGATGATGAGCTCTTGAAGTATACTCAAGAGGAAGAATACGAAGTGTTTGATCTGAGGATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAACTTCCGATTGTGCTAAATACAGTCTTGGCTGGAAGGTATTATTTAACCGAGTATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGATCTTCGGACAGGGATAGATGTTTGTTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTTCTGAAACTTGTCAATAAGGGTGACCCAGCAGATAAACATCACATTTTGCGCCTTTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTAACTGAACTTCTCCGAGCAAACTTGTATGAATTTCAGAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACATTAAAGAGATTGCAGATCATTACTCGTCAGTGTTTGGAAGCATTGCAATACTTGCATGGCTTGGGAATTGTTCACTGTGACCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAGATGTGAGATAAAGGTTATTGATCTTGGAAGTAGTTGCTTCCAAACTGACAATCTGTGCCTGTATGTACAGTCCAGATCTTATAGAGCTCCTGAAGTGATGTTAGGTCTTCAATATGATGAGAAGATTGATATATGGTCTCTCGGATGCATCTTGGCGGAGCTATGCTCTGGTGAAGTTCTGTTTCCAAATGATGCAGTTGTGATGATCCTGGCACGCATAATTGGAATGTTTGGTTCTATTGATATGGAAATGTTGGTGAAAGGACAAGAAACGCACAAGTACTTCACCAAAGAATATGATATTTATTATATAAATGAGGAGACTGATCAACTGGAGTTCTTGATTCCAGAAGAGTCATCGTTGGAGCAGCACCTACAGGTTACTGATACTATGTTTATCAACTTTATCAGATACCTACTCTGCATCAACCCCAAGAGAAGGCCTACTGCAAGACAAGCACTAAAGCATCCATGGCTTTCCTATGTTTACTAA	2166	0.4197	MAVSNGVEAVLEFLRKNGLSEAESALREDIIENTDLGNFDYEKFFFPMVPPPPPVRVRSFSLPSELAAADEDSSKSSSDEFVTIDSSTSRVSSSEFVNPYGIRSSSQTQNDSESSSERLSQFGTARDYHDFDMQNEPYWYNEKDDEYFMTPSFEGPDYFACRSEDKFVMTAETDNQRDNSLNLDYNYEEFQLKGNGNGNGGYMDKACLDNHSSVVDGTVTHSKGYCHVDNKDQFEGELEGNAEKPSVSCSCEVPFCKSSPGSGGSCSLDPTNFGYPNLKEIHLNNFHLGVVGDINSFDSTSELTLNQNFGHYTKNDSSKEYKGPYDLTIEVTDKNLPNGLDTYKAQLGGELTEDRQDPEFAADEEDTTDDELLKYTQEEEYEVFDLRIIHRKNRTGFEENKELPIVLNTVLAGRYYLTEYLGSAAFSRVVQAHDLRTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKGDPADKHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQIITRQCLEALQYLHGLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFQTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARIIGMFGSIDMEMLVKGQETHKYFTKEYDIYYINEETDQLEFLIPEESSLEQHLQVTDTMFINFIRYLLCINPKRRPTARQALKHPWLSYVY	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g02342	721	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	107	717	-	-
	Viun8g02342	721	Pfam	Protein kinase domain	418	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02342	721	SMART	serkin_6	415	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02342	721	CDD	PKc_DYRK_like	415	717	-	-
	Viun8g02342	721	FunFam	Serine/threonine-protein kinase ppk15	494	718	-	-
	Viun8g02342	721	SUPERFAMILY	Protein kinase-like (PK-like)	404	718	IPR011009	-
	Viun8g02342	721	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	541	553	IPR008271	GO:0004672\|GO:0006468
	Viun8g02342	721	Gene3D	Phosphorylase Kinase; domain 1	410	496	-	-
	Viun8g02342	721	Gene3D	Transferase(Phosphotransferase) domain 1	469	717	-	-
	Viun8g02342	721	FunFam	Putative serine/threonine-protein kinase dyrk2	409	496	-	-
	Viun8g02342	721	ProSiteProfiles	Protein kinase domain profile.	415	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g02342	721	MobiDBLite	consensus disorder prediction	349	368	-	-
	Viun8g02342	721	MobiDBLite	consensus disorder prediction	98	121	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g02342	Viun-Chr8	33342131	33347746	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g02342	412	712	MAP Kinase Gene Family	AT5G19010	31.153	8.55e-33	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Viun8g02342		Pkinase	7.3e-51	CL0016