Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02323 ATGTTTCTTCTCAGTGTTGTTTCACAGAGCTTAGTGTACATGATGCCACCTACAGTTGCTCTCTCTTTGAGTTCAGAGAGTGACAAGCTGGCTTTACTTGCTTTGAAGCATAAGCTTACCAATGGAGTCGCCAATGCTCTTCCATCATGGAACAACTCTCTGCATTTCTGTGAGTGGCAGGGTGTTACATGCGGACATCGCCATATGAGAGTCTCTGTCTTGCACTTGCAAAATCAAAACTGGGGTGGCACTCTTGGACCATCTTTGGGAAATCTAACCTTCCTCACAACCCTCATTCTTTCCAACATCAACTTGCATGGGGAAATTCCCACACAAATTGGTCGACTAAAGAGTTTGCAGCTTCTTGACTTGAGCCACAACAGTCTAAATGGTCAGATTCCTGTGCACCTTTCTAACTGCTCTAAACTTGAGGTCATTAACTTGTTGTACAATAAACTCACTGGAAAAGTTCCCTCATGGTTTGGAAGTGGATCCATGACACGACTAAATAAGTTGCTTCTTGGTGCCAATGATCTAGTTGGTACTATCCCAGCTTACTTGGGGAATCTTTCATCCCTCCAAAATATCACAGTTGCGAGAAACCATTTGGTGGGAAATATACCAGATGTTTTGGGTCGGTTATCAAATTTGAAAGAGCTGAATCTTGGTTTAAATAATTTGTCGGGAGTAGTGCCTGATTCTCTTTATAACCTTTCCAATATTCAAACTTTTGTTCTCGGGGTAAACCGGTTATCTGGTACTCTTTCATCAAAAATGCAACTTGCTTTTCCAAACCTTAGAGCATTCTTTGTTGGAGATAATCAGTTGAATGGAGCTTTCCCGTCTTCAATATCCAACATCACCGGATTGCAAAGGTTTGATATCTCCTTAAATGGTTTTAGTGGGCCAATTCCTCCCACTTTGGGAAGCTTAAACAAACTCGAGACGTTTAGCATTTTTGATAATAGATTTGGAAGTGGGAGCGCTCAAGATTTAGATTTCCTTTCCTCTTTAACCAATTGTACTCGATTGAAGATACTTCTTTTGGGTTGGAATGAATTTTGCGGTGTGTTGCCGGATCTTATTGGCAATTTTTCTACCAATCTCACTTCGCTCAGTATGGAGTGTAATCAAATAACTGGAACGATACCTGAACGAATTGGACAGCTAATCGGTTTAACTAACTTCGTCGTGATTAATAATTATCTTGAGGGAAGCATTCCAGATTCAATTGGAAAGCTTAAAAATCTAGTAAGATTGGCCCTGCAAGAAAACAAACTGTCTGGTCATATTCCTACCGCCATTGGCAATCTTACTATGTTGTCTGAATTTTATCTGCACACCAATAAATTCCAAGGAAGCATTCCATTAAGCCTCAAACACTGCACACGCATGCAGTCATTTGGTGTTTCCACCAACAACTTGAGTGGAGATATCCCTGATCAAATATTTGGCAATCTAGAAGGTTTGATAAATCTTGACTTATCAAACAACTCTTTCACTGGTTCCATCCCTTTAGAATTTGGAAACTTGAAGCACCTTTCCGTATTATATCTACACGAAAACAAGTTGTCTGGTGAAATTCCCCCAGAACTTGGAGCTTGTTCGGCCTTAACAGAACTCATGCTGCAGGGAAACTTCTTCCCGGGAAGCATACCTTCGTTCTTGGGCTCTTTAGGATCCTTGGAAATCCTAGACCTTTCTAACAACAACTTCTCAAGCACAATCCCTGTTGAACTACAAAATCTGACTTTTTTGCATGCTTTGAACTTGTCTTTTAACCATCTTTATGGTGAGGTTCCCATAGGAGGCGTCTTTAATAATGTTACTGCAATTTCACTCATTGGAAATAAGGATCTCTGTGGGGGAATACCTCAACTGAAGCTCCCTGCATGCTCTAGGACTCTCTCAAAGAAACACAACTGGTCTTTTCGAAACAAACTCATCCTCATCATTGTAATTGGAGTTGGAGGGGTTTTGATGAGTTCCATAATATCTATCACCATCTATTATTTCAGGAAAAAGCCCAAATTACTTTGTCCGTCACGGTCTCTGCAAAATATGCATTTGAAGGTTTCTTATGAAGAGCTGCATGAAGCAACCGATGGATTTTCTTCATCCAATTTAGTAGGTGCTGGAAGCTTTGGCTCTGTGTACCGAGGATCTCTTCTCCATTTTGAAAAATCTATTGCTGTGAAGGTGTTGAACCTTGAAGCTAGGGGGGCGTCAAAGAGTTTTACATCCGAATGCAAGGCTCTAGAAAAGATCAAGCACCGGAATGTACTTAAGATCCTAACTTATTTCTCAGGTGTTGATTATAACGGAGATGATTTCAAGGCTATAGTTTTTGAGTTCATGCTTAACGGGAGTGTAGAAAGTTTGCTGCACAGCGACGAAAAGCTCAATTCTATAAATCTCAATCCCAACCTTCAACTCAGGCTAAATATTGCTCTAGATGTTGCTAATGCATTGGATCATCTTCACCATGGTTCCGAGAAAACAATAATTCACTGTGATATTAAGCCAAGCAACGTTCTTCTTGATGATGACGCTGTTGCCCACTTAGGAGATTTTGGGTTAGCAAGGCTCCTCAATATGTTCACGGGACATGCAAGCAGAGATCAGGTTAGTTCGTCAGCAGCAATCAAAGGAACCATTGGATATGTTCCCCCAGAGTACGGGGCAGGTGGTCGAGTATCAGAAAAAGGTGATATTTACAGTTATGGAATTCTTGTGTTGGAGATGCTGACGGGGAAGAGACCAACGGATGAGATGTTTGGTGAGGGTTTAAGCCTACACAAATTCTGTCAGATGGCAATTCCTGAAAGAATTCTTGAGATAGTGGATTCACGTTTGCTTCTGCCATTTGGGGTCATGGAAACCAACATCAGAGAGTGTTTCGCTTCTTTTGCTAGGATTGGAGTTGCATGTTCTGCAGAATTGCCCGTTCAACGGTTGGCCATAAAAGATGCGATAATGGAGTTGAATGCAATCAAACACAAGTTGTCTTACTAG 3015 0.4113 MFLLSVVSQSLVYMMPPTVALSLSSESDKLALLALKHKLTNGVANALPSWNNSLHFCEWQGVTCGHRHMRVSVLHLQNQNWGGTLGPSLGNLTFLTTLILSNINLHGEIPTQIGRLKSLQLLDLSHNSLNGQIPVHLSNCSKLEVINLLYNKLTGKVPSWFGSGSMTRLNKLLLGANDLVGTIPAYLGNLSSLQNITVARNHLVGNIPDVLGRLSNLKELNLGLNNLSGVVPDSLYNLSNIQTFVLGVNRLSGTLSSKMQLAFPNLRAFFVGDNQLNGAFPSSISNITGLQRFDISLNGFSGPIPPTLGSLNKLETFSIFDNRFGSGSAQDLDFLSSLTNCTRLKILLLGWNEFCGVLPDLIGNFSTNLTSLSMECNQITGTIPERIGQLIGLTNFVVINNYLEGSIPDSIGKLKNLVRLALQENKLSGHIPTAIGNLTMLSEFYLHTNKFQGSIPLSLKHCTRMQSFGVSTNNLSGDIPDQIFGNLEGLINLDLSNNSFTGSIPLEFGNLKHLSVLYLHENKLSGEIPPELGACSALTELMLQGNFFPGSIPSFLGSLGSLEILDLSNNNFSSTIPVELQNLTFLHALNLSFNHLYGEVPIGGVFNNVTAISLIGNKDLCGGIPQLKLPACSRTLSKKHNWSFRNKLILIIVIGVGGVLMSSIISITIYYFRKKPKLLCPSRSLQNMHLKVSYEELHEATDGFSSSNLVGAGSFGSVYRGSLLHFEKSIAVKVLNLEARGASKSFTSECKALEKIKHRNVLKILTYFSGVDYNGDDFKAIVFEFMLNGSVESLLHSDEKLNSINLNPNLQLRLNIALDVANALDHLHHGSEKTIIHCDIKPSNVLLDDDAVAHLGDFGLARLLNMFTGHASRDQVSSSAAIKGTIGYVPPEYGAGGRVSEKGDIYSYGILVLEMLTGKRPTDEMFGEGLSLHKFCQMAIPERILEIVDSRLLLPFGVMETNIRECFASFARIGVACSAELPVQRLAIKDAIMELNAIKHKLSY 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02323 1004 Gene3D Ribonuclease Inhibitor 164 330 IPR032675 -
Viun8g02323 1004 Gene3D Ribonuclease Inhibitor 331 641 IPR032675 -
Viun8g02323 1004 SUPERFAMILY L domain-like 366 622 - -
Viun8g02323 1004 ProSiteProfiles Protein kinase domain profile. 704 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02323 1004 PRINTS Leucine-rich repeat signature 119 132 - -
Viun8g02323 1004 PRINTS Leucine-rich repeat signature 559 572 - -
Viun8g02323 1004 FunFam Leucine-rich repeat receptor protein kinase EMS1 163 258 - -
Viun8g02323 1004 FunFam Inactive leucine-rich repeat receptor-like protein kinase 340 632 - -
Viun8g02323 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Viun8g02323 1004 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 261 339 - -
Viun8g02323 1004 Gene3D Transferase(Phosphotransferase) domain 1 786 1003 - -
Viun8g02323 1004 SMART LRR_typ_2 116 140 IPR003591 -
Viun8g02323 1004 SMART LRR_typ_2 559 582 IPR003591 -
Viun8g02323 1004 SMART LRR_typ_2 487 510 IPR003591 -
Viun8g02323 1004 SMART LRR_typ_2 511 535 IPR003591 -
Viun8g02323 1004 SMART LRR_typ_2 583 608 IPR003591 -
Viun8g02323 1004 SMART LRR_typ_2 214 237 IPR003591 -
Viun8g02323 1004 SMART LRR_typ_2 414 438 IPR003591 -
Viun8g02323 1004 SUPERFAMILY Protein kinase-like (PK-like) 686 995 IPR011009 -
Viun8g02323 1004 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Viun8g02323 1004 Pfam Leucine rich repeat 470 524 IPR001611 GO:0005515
Viun8g02323 1004 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Viun8g02323 1004 Pfam Protein kinase domain 706 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02323 1004 ProSiteProfiles Leucine-rich repeat profile. 561 584 IPR001611 GO:0005515
Viun8g02323 1004 PANTHER OS04G0122200 PROTEIN 97 208 - -
Viun8g02323 1004 FunFam Nuclear pore complex protein NUP107 25 162 - -
Viun8g02323 1004 SMART serkin_6 704 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02323 1004 Gene3D Ribonuclease Inhibitor 25 163 IPR032675 -
Viun8g02323 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 786 1004 - -
Viun8g02323 1004 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Viun8g02323 1004 FunFam LRR receptor-like serine/threonine-protein kinase EFR 677 785 - -
Viun8g02323 1004 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Viun8g02323 1004 SUPERFAMILY RNI-like 74 380 - -
Viun8g02323 1004 Gene3D Phosphorylase Kinase; domain 1 684 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02323 Viun-Chr8 33241234 33245331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02323 23 1002 Receptor kinase-like Gene Family AT3G47570 43.131 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun8g02323 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02323 - - gmx:100776429 1497.64