Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02317 ATGATGCCACGTACACTTGCTCTCTCTTTGAGTTCAGAGAGTGACAAGCAGGCTTTACTTGCTTTGAAGCTTAAGCTTACCAATGGAGTCGCCAATGCTCTTCCATCATGGAACAGCTCTTTGCATGTCTGTGAATGGAAGGGTGTTGCATGCGGACAACGCCACATGAGAGTCTCCGTCTTGCACTTGGAAAATCAAACATGGGGTGGCACTCTTGGACCATCTTTGGGAAATCTAAGCTTCCTCACAACCCTCATTCTTTACAACATTAACTTGTATGGGGAAATTCCCACACAAATTGGACAACTAAAGAGGTTGCAGCTTCTTGATTTGAGCCTCAACAACCTAAATGGTCAGATTCCTATACACCTTACCAACTGCTCTAAACTTGAGGCCATTGGCTTGTTGGAAAATAAACTCACTGGAAAAGTTCCCTCCTGGTTTGGAAGTGGATCCATGACACGGCTAAAAACGTTGTTTCTTGGTGCCAATGATCTAGTTGGTACCATCCCACCTTCCTTGGGGAATCTTTCATCCCTTCAATATATCTCAGTTGCTAGAAATCATTTGGTGGGAAGTATACCACATGTTTTGGGTCAATTATCAAATTTGAAAAGACTGGATCTTGGTTTAAATAGTTTGTCAGGAGTAGTCCCTTATTCTCTTTATAATCTTTCCAGTATTCAAAGTTTTGCTCTCGATGCAAACCAGTTATCTGGGACTTTTCCGTCAAAAATGCAACTTGTTTTTCCAAACCTTAGAGCATTCTTGGTTGGAGGGAACCAGTTCAATGGAACTTTCCCGTCTTCAGTATTCAACATCACTGGATTGGAAAGGTTTGATATCTCCTCGAATGGTTTTAGTGGGTCAATTCCTCCCACTCTGGGAACCTTAAATAAACTTCAGCTGTTTCACATTGCTTACAATAGTTTTGGAAGTGGGAGAGCTCGTGATTTGGATTTCCTTTCATCATTAACAAATTGTACTCATTTGCGCATACTTATTTTGGATGGCAATGGATTTGGTGGTGACTTGCCACGTCTTATCGGCAATTTTTCAACCCACCTGAATATGCTTAGTATGGGGTTGAATCAAATATCTGGAACGATACCTGAAGGAATTTGGCAGCTAATCGGTTTGACCGAAATCACCATGCAAAATAATTATCTAGTGGGAACTATTCCAGATTCGATTGGAAGGCTTAAAAACCTAGTAAGACTGGTCCTAGGAGAAAACAAATTGTCTGGTAATATTCCAACTGCCATTCGCAATCTTACTATGTTGTCTGAACTTGATCTGCACACAAATGGATTTGTTGGAGGCGTTCCATTAAGCCTCAAATACTGCATGCGAATGCAGTCAATTGATGTTTCCACCAACAACTTGAATGGGGATATCCCTAATCAAACCTTTGGCAATTTTGAAGGTTTGACAAAGCTTGACTTATCCTACAATTCTTTCACTGGTTCCATCCCTTCAGACTTTGGAAACTTGAAGCACCTTTCCGGTTTGTATCTTCATGGAAACAAATTGTCTGGTGAATTACCCCAAGAGCTTGGCGCTTGTTACGGGTTAACAGAGCTCGCATTGGAGAGTAACTTCTTCCGCGGAAGCATACCGTCGTTCTTGGGCTCTTTAGGATCCCTTGAATTCCTAGACCTTTCTAACAATAACTTCTCAAGCACAATCCCTGTTGAACTACAAAAGTTGAGTTATTTGAATGCTTTGAACTTGTCTTTTAACCATCTTTATGGTGAGGTTCCCACAGGAGGTGTCTTTAATAATGTTACAGCAATTTCACTCATTGGAAATAAGGATCTCTGTGGTGGCATACCTCAACTGAAGCTTCCTGCATGCTCTAAGTTGTCCTCAAAGAAACACAAGTGGTCTTTTAAAGAGAAACTCATCCTCATCATTGCAATTGTCGTTGGCGTGGGTTTGGTTACTTCAACACTGTTTATCAGCATTTATTTGTTCAGGAAAAGGCCCATAACACCCAAAACACCATCGACTTCATGTTCTCATAAAAACAAGTACGTGAAGGTTTCTTATGGAGATCTGCATAAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGTTCGGGAGGCTTTGGTTCTGTATATAGTGGATCTCTTCTCCCTTTCGAAACACCTGTTGCTGTGAAGGTATTGAATCTTGAAAGAGGTGGTGCATCAAAGAGTTTCGCAGCTGAGTGCAAGGCTCTAGGAAGGATCATGCATCGGAATCTTCTCAACATCTTGACTTGTTGCTCAAGTATTGATTATAACGGTAAAGATTTCAAGGCTATAGTTTTCGAGTTCATGCCTAATGGCAGTCTAGAAAGTTTGCTGCACGACAACGTTGAGCCCGAGTCGAGAAATTTAAGTGTCAACCTTGATCTTGTGGTAAATATTGCTCTTGACGTTGCTAATGCATTGGATTATCTTCATCATGGTTCTGAGGAAGCTATAGTTCACTGTGATATTAAGCCAAGCAACGTTCTTCTTGATGATGACATGGTTGCTCACTTGGGTGATTTTGGGTTAGCAAGACTCCTTCATGTGGCAACGGGACATTCCAGCAGAGATCAAGTTAGTTCCTCTGCAATTAGAGGAACCATTGGATATGTTCCACCAGAGTACGGAACAGGTTGTCGAGTATCAACTAAAGGAGATATGTACAGCTACGGAATTCTTGTGTTAGAGATGGTGACAGGGAGGAGACCAACAGATGCAATGTTTGGTGAAGGTGCAAGTCTACACAAATTCTGCCAAATGGCAATTCCAGAAGGGTTCACTGAGATAGCAGATTCACGTTTGCTTGTACCAGTTGTTGAAGAAGGAAGAAGGATGATGGAAATAAAAATTAGGGAGTGTTTGGTGGGCTTAGCAAGGATTGGAGTTGAATGTTCTGCTGAATTACCTGTTGATCGAATGGACATAAAAGATGTGGTACTGGAGCTGCACTCAATCAAACAGAGCCTGTGTCACTGA 2997 0.4151 MMPRTLALSLSSESDKQALLALKLKLTNGVANALPSWNSSLHVCEWKGVACGQRHMRVSVLHLENQTWGGTLGPSLGNLSFLTTLILYNINLYGEIPTQIGQLKRLQLLDLSLNNLNGQIPIHLTNCSKLEAIGLLENKLTGKVPSWFGSGSMTRLKTLFLGANDLVGTIPPSLGNLSSLQYISVARNHLVGSIPHVLGQLSNLKRLDLGLNSLSGVVPYSLYNLSSIQSFALDANQLSGTFPSKMQLVFPNLRAFLVGGNQFNGTFPSSVFNITGLERFDISSNGFSGSIPPTLGTLNKLQLFHIAYNSFGSGRARDLDFLSSLTNCTHLRILILDGNGFGGDLPRLIGNFSTHLNMLSMGLNQISGTIPEGIWQLIGLTEITMQNNYLVGTIPDSIGRLKNLVRLVLGENKLSGNIPTAIRNLTMLSELDLHTNGFVGGVPLSLKYCMRMQSIDVSTNNLNGDIPNQTFGNFEGLTKLDLSYNSFTGSIPSDFGNLKHLSGLYLHGNKLSGELPQELGACYGLTELALESNFFRGSIPSFLGSLGSLEFLDLSNNNFSSTIPVELQKLSYLNALNLSFNHLYGEVPTGGVFNNVTAISLIGNKDLCGGIPQLKLPACSKLSSKKHKWSFKEKLILIIAIVVGVGLVTSTLFISIYLFRKRPITPKTPSTSCSHKNKYVKVSYGDLHKATNGFSSSNLVGSGGFGSVYSGSLLPFETPVAVKVLNLERGGASKSFAAECKALGRIMHRNLLNILTCCSSIDYNGKDFKAIVFEFMPNGSLESLLHDNVEPESRNLSVNLDLVVNIALDVANALDYLHHGSEEAIVHCDIKPSNVLLDDDMVAHLGDFGLARLLHVATGHSSRDQVSSSAIRGTIGYVPPEYGTGCRVSTKGDMYSYGILVLEMVTGRRPTDAMFGEGASLHKFCQMAIPEGFTEIADSRLLVPVVEEGRRMMEIKIRECLVGLARIGVECSAELPVDRMDIKDVVLELHSIKQSLCH 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02317 998 SMART serkin_6 694 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02317 998 FunFam LRR receptor-like serine/threonine-protein kinase EFR 666 775 - -
Viun8g02317 998 Gene3D Ribonuclease Inhibitor 11 154 IPR032675 -
Viun8g02317 998 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 52 318 - -
Viun8g02317 998 Pfam Leucine rich repeat N-terminal domain 13 51 IPR013210 -
Viun8g02317 998 ProSiteProfiles Protein kinase domain profile. 694 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02317 998 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 776 998 - -
Viun8g02317 998 SUPERFAMILY RNI-like 250 589 - -
Viun8g02317 998 SMART LRR_typ_2 153 177 IPR003591 -
Viun8g02317 998 SMART LRR_typ_2 498 522 IPR003591 -
Viun8g02317 998 SMART LRR_typ_2 474 497 IPR003591 -
Viun8g02317 998 SMART LRR_typ_2 546 569 IPR003591 -
Viun8g02317 998 SMART LRR_typ_2 401 425 IPR003591 -
Viun8g02317 998 SMART LRR_typ_2 103 127 IPR003591 -
Viun8g02317 998 SMART LRR_typ_2 201 224 IPR003591 -
Viun8g02317 998 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Viun8g02317 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 149 - -
Viun8g02317 998 SUPERFAMILY RNI-like 61 351 - -
Viun8g02317 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Viun8g02317 998 Pfam Protein kinase domain 696 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02317 998 SUPERFAMILY Protein kinase-like (PK-like) 670 989 IPR011009 -
Viun8g02317 998 Gene3D Ribonuclease Inhibitor 155 317 IPR032675 -
Viun8g02317 998 Gene3D Transferase(Phosphotransferase) domain 1 776 997 - -
Viun8g02317 998 FunFam LRR receptor-like serine/threonine-protein kinase EFR 319 625 - -
Viun8g02317 998 Gene3D Ribonuclease Inhibitor 318 628 IPR032675 -
Viun8g02317 998 Pfam Leucine rich repeat 379 437 IPR001611 GO:0005515
Viun8g02317 998 Pfam Leucine rich repeat 525 583 IPR001611 GO:0005515
Viun8g02317 998 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515
Viun8g02317 998 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Viun8g02317 998 ProSiteProfiles Leucine-rich repeat profile. 548 569 IPR001611 GO:0005515
Viun8g02317 998 Gene3D Phosphorylase Kinase; domain 1 659 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02317 Viun-Chr8 33163422 33166569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02317 10 994 Receptor kinase-like Gene Family AT3G47570 45.720 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun8g02317 Pkinase 6.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02317 - - gmx:100777490 1446.8