Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02316 ATGGCTGAACAGAAGCACGATATGGTCACTAGGAACCCTAGCTGGGAAAAGAACGAAATGAGCAATAGAAACAAAAGATTATTATGGAACAACTCTGTGCATTTCTGTGAGTGGCAGGGTGTTACATGCGGACATCGCCACATGAGAGTCTCTGTCTTGCACTTGCAAAATCAAAACTGGGGTGGCACTCTTGGACCATCTTTGGGAAATCTAAGCTTCCTCACAACCCTCATTCTTTCCAACATCAACATGCATGGGGAAATTCCCACACAAATTGGTCGACTAAAGAGGTTGCAGGTTCTTCACTTGAGCCACAACAGTCTAAATGGTCAGATTCCTGTACACCTTTCTAACTGCTCTAAACTTGAGGTCATTAACTTGTTGTACAATAAACTCAATGGAAAAGTTCCCTCCTGGTTCGGACTTGGATCCATGACACGGCTAAATAAGTTGCTTCTTGGTGCCAATGATCTTGTTGGTACTATCCCACCTTCCATGGGGAATCTTTCGTCCCTCCAAAGTATCACAATTGCTAGAAATCATTTGATGGGAAGTATACCGCATGTTTTGGGTCGGTTATCAAATTTGAAAGAGCTGAATACTGGTTTAAATAATTTTTCAGGAGAAGTGCCTGATTCTCTTTATAATCTTTCCAATATTCAAGTTCTTGTTCTAGGGGGAAACCAGTTATCTGGTACTCTTCCATCAAAAATGCAACTTGCTTTTCCAAACCTTAGAGCATTCTTTGTTGGAGAGAACCAGTTGAATGGAGCTTTCCCGTCTTCAATATCCAACATCACCGGATTGCAAGCGTTTGATATCTCCTTAAATGGTTTTAGTGGTCCAATTCCTCCCACTTTCGGAAGCTTAAACAAACTCAAGACGTTTAGCATTTTTGATAATAGATTTGGAAGTGGGAGCGCTCAAGATTTAGATTTCCTTTCCTCTTTAACCAATTGTACTCAATTAAAGATACTTCTTTTGGGTTGGAATGAATTTGGTGGTGTGTTGCCAGATCTTATTGGCAATTTTTCTACCAATCTCACTTCGCTCAGTATGGAGTGTAATCAAATAACTGGAACGATACCTGAACGAATTGGACAGCTAATCGGTTTAACTAACTTCGTCGTGATTAATAATTATCTTGAGGGAAGCATTCCAGATTCAATTGGAAAGCTTAAAAATCTAGTGAGATTGGCCCTTCAAGAAAACAAACTGTCTGGTAATATTCCTACAGCCATTGGCAATCTTACTATGTTGTCTGAACTTTATCTGCACACCAATAAATTACAAGGAAGCATTCCATTAAGCCTCAAACACTGCACGCGAATGCAGTCATTTGGTGTTTCCACCAACAACTTGAGTGGAGATATTCCTAGCCAAACATTTGGCAGTCTAGAAGGTTTGATAAATCTTGACTTATCAAACAACTCTTTCACTGGTTCCATCCCTTTAGAGATTGGAAACTTGACGCACCTTTCCATACTATATCTAAACGAAAACAAGTTGTCTGGTGAAATTCCTGCCAAACTTGCTGCTTGTTCCGAATTAACAGAACTCATGTTGCAGATAAACTTTTTCCGAGGAAGCATACCGTCGTTCTTGGGCTCTTTAGGAACCCTTGAATTCCTAGACCTTTCTAACAATAACTTCTCAAGCACAATCCCTGTTGAACTACAAAAGTTGAGTTATTTGAATGCTTTGAACTTGTCTTTTAACCATCTTTATGGTGAGGTTCCCACAGGAGGTGTCTTTAATAATGTTACAGTAATTTCACTCATTGGAAATAAGGATCTCTGTGGTGGCATACCTCAACTGAACCTTCCTGCATGCTCTAAGTTGCCCTCAAAGAAACACAAGTGGTCTTTTATAAAGAAACTCATCTGCATCATTGCAATTGTCGTTGGAGTGGGTTTGGTTACTTCAACACTGTTTATCAGCATTTATTTGTTCAGGAAAAGGCCAATAACAGCCAAAACACCATGGGCTTCATGTTCTCATAAAAACAAGTACGTGAAGGTTTCTTATGGAGATCTGCATAAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGTTCGGGAAGCTTTGGTTCTGTATATAGTGGATCTCTTCTCCCTTTCGAAACACCTATTGCTGTGAAGGTATTGAATCTTGAAATAGGTGGTGCATCAAAGAGTTTCGCAGCTGAGTGCAAGGCTCTTGGAAGGATCATGCATCGGAATCTTCTCAACATCTTGACTTGTTGTTCAAGTATTGATTATAACGGTAAAGATTTCAAGGCTATAGTTCTCGAGTTCATGCCAAATGGCAGTCTAGAAAGTTTGCTGCACGACAAAGTAGAGCCCAAATCTAGAAATTTGAGTCTCAACCTTGATCTTGTGGTAAATATTGCTCTTGACGTTGCTAATGCATTGGATTATCTTCATCATGATTCTGAGGAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAACGTTCTTCTTGATGATGACATGGTTGCTCACTTGGGTGATTTTGGGTTAGCAAGACTCCTTCATGTGGCGACGGGACATTCCAGCAGAGATCAAGTTAGTTCCTCTGCAATTAGAGGAACCATTGGATATGTTCCACTAGAGTACGGAACAGGGTGTGGAGTATCAACTAAAGGAGATATCTACAGTTATGGAATTCTTGTGTTGGAGATGGTGACAGGAAGGAGACCAACAGATGCAATGTTTGGTGAGGGTCTAAGCCTACACAAATTCTGCCAAATGGCAATTCCAGAAGGAATCACTGAGATTGTGGATTCACGTTTGGTTGTGGCAAGTGGTGAAGAAGGAAGAAGGGTGATGGAAACAGAAATTAGGGAGTGTTTGGTTGACTTAGTTAGGATTGGAGTTAGATGTTGTGCAGAAAAACCTGTTGAGCGAATGGACATAAAAGATGTGGTACTGGAGTTGGATACAATCAAAGAGAGACTGTCACTGAGTCAATAG 2979 0.4042 MAEQKHDMVTRNPSWEKNEMSNRNKRLLWNNSVHFCEWQGVTCGHRHMRVSVLHLQNQNWGGTLGPSLGNLSFLTTLILSNINMHGEIPTQIGRLKRLQVLHLSHNSLNGQIPVHLSNCSKLEVINLLYNKLNGKVPSWFGLGSMTRLNKLLLGANDLVGTIPPSMGNLSSLQSITIARNHLMGSIPHVLGRLSNLKELNTGLNNFSGEVPDSLYNLSNIQVLVLGGNQLSGTLPSKMQLAFPNLRAFFVGENQLNGAFPSSISNITGLQAFDISLNGFSGPIPPTFGSLNKLKTFSIFDNRFGSGSAQDLDFLSSLTNCTQLKILLLGWNEFGGVLPDLIGNFSTNLTSLSMECNQITGTIPERIGQLIGLTNFVVINNYLEGSIPDSIGKLKNLVRLALQENKLSGNIPTAIGNLTMLSELYLHTNKLQGSIPLSLKHCTRMQSFGVSTNNLSGDIPSQTFGSLEGLINLDLSNNSFTGSIPLEIGNLTHLSILYLNENKLSGEIPAKLAACSELTELMLQINFFRGSIPSFLGSLGTLEFLDLSNNNFSSTIPVELQKLSYLNALNLSFNHLYGEVPTGGVFNNVTVISLIGNKDLCGGIPQLNLPACSKLPSKKHKWSFIKKLICIIAIVVGVGLVTSTLFISIYLFRKRPITAKTPWASCSHKNKYVKVSYGDLHKATNGFSSSNLVGSGSFGSVYSGSLLPFETPIAVKVLNLEIGGASKSFAAECKALGRIMHRNLLNILTCCSSIDYNGKDFKAIVLEFMPNGSLESLLHDKVEPKSRNLSLNLDLVVNIALDVANALDYLHHDSEEAVVHCDIKPSNVLLDDDMVAHLGDFGLARLLHVATGHSSRDQVSSSAIRGTIGYVPLEYGTGCGVSTKGDIYSYGILVLEMVTGRRPTDAMFGEGLSLHKFCQMAIPEGITEIVDSRLVVASGEEGRRVMETEIRECLVDLVRIGVRCCAEKPVERMDIKDVVLELDTIKERLSLSQ 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02316 992 FunFam LRR receptor-like serine/threonine-protein kinase EFR 658 767 - -
Viun8g02316 992 ProSiteProfiles Protein kinase domain profile. 686 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02316 992 Gene3D Ribonuclease Inhibitor 242 309 IPR032675 -
Viun8g02316 992 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Viun8g02316 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Viun8g02316 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 768 992 - -
Viun8g02316 992 PANTHER RECEPTOR-LIKE PROTEIN 55 376 986 - -
Viun8g02316 992 FunFam LRR receptor-like serine/threonine-protein kinase EFR 312 617 - -
Viun8g02316 992 Gene3D Ribonuclease Inhibitor 13 141 IPR032675 -
Viun8g02316 992 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 44 311 - -
Viun8g02316 992 SUPERFAMILY L domain-like 22 318 - -
Viun8g02316 992 SMART LRR_typ_2 393 417 IPR003591 -
Viun8g02316 992 SMART LRR_typ_2 538 561 IPR003591 -
Viun8g02316 992 SMART LRR_typ_2 217 240 IPR003591 -
Viun8g02316 992 SMART LRR_typ_2 490 514 IPR003591 -
Viun8g02316 992 SMART LRR_typ_2 169 193 IPR003591 -
Viun8g02316 992 SMART LRR_typ_2 95 119 IPR003591 -
Viun8g02316 992 SMART serkin_6 686 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02316 992 Gene3D Phosphorylase Kinase; domain 1 652 767 - -
Viun8g02316 992 Pfam Protein kinase domain 688 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02316 992 Gene3D Ribonuclease Inhibitor 310 620 IPR032675 -
Viun8g02316 992 Gene3D Ribonuclease Inhibitor 142 241 IPR032675 -
Viun8g02316 992 SUPERFAMILY RNI-like 242 582 - -
Viun8g02316 992 Gene3D Transferase(Phosphotransferase) domain 1 768 991 - -
Viun8g02316 992 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
Viun8g02316 992 SUPERFAMILY Protein kinase-like (PK-like) 665 981 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02316 Viun-Chr8 33152224 33156195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02316 7 988 Receptor kinase-like Gene Family AT3G47570 44.478 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun8g02316 Pkinase 3.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02316 - - gsj:114384365 1459.51