Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02315 ATGGCTCTAAGTGTAGTAATGTTTCTTCTCAGTGTTGTCTTACAAACCTTGGTGTACATAACACCAGATACGGTTGCCCTTGTTTTGAGTTCAGAGAGTGATAAGGTGGCTTTACTTGCCTTGAAGAAGAAGCTTACCAATGGAGTGCCTAATTCCCTTCCATCATGGAACCACTCTTTGCATTTATGTGAGTGGCAGGGTCTAACATGCAGTCGCCGCCACAAGAGAGTCTCTGTCTTGCACTTGAAAAATCAGAACTGGAATGGTATTCTTGGACCATCCTTGGGAAATCTAACCTTCCTCAGAGCCCTCATTCTTTCCAACATCAACATGCATGGTGAAATTCCGACACAAATTGGTCGACTAAAGAGGTTGCAGCTTCTTGACTTGAGCAACAACAATCTAAATGGTCAGATTCCTATGCACCTTATCAACTGCTCTAAACTTGAGGTCATTAACTTGTTGTACAACAAACTCAATGGAAAACTTCCCTCCTGGTTTGGACTTGGATCCATGACACGCCTTAATAAGTTGCTTCTCGGTGCCAATGATCTAGTCGGTACTATCCCACCTTCCTTGGGCAATCTTTCATCCCTCCAACATATCACAGTGGCAAGAAATCATTTGGTGGGAAGTATACCACATGTTTTGGGTCGGTTATCAAATTTGAAAGAGCTGAATCTTGGTTTAAATGATTTGTCAGGAGTAGTGCCTGATTCTCTTTATAACCTTTCCAATATTCAAATTTTTGTTCTCGGGGTAAATCGCTTATCTGGTACTTTTCCACCAAAAATGCAACTTGCTTTTCCAAACCTTCGAGCATTTTTTGTTGGGGGCAACGAGTTCAGTGGAACATTCCCGTCTTCAATATCCAACATCACCGGATTACAAGTGTTTGATATCTCCTCAAATGATTTTAGTGGGCCAATTCCTCACACTTTGGGAAGCTTAAATAAACTTCAGAAGTTTAACATTGCTAACAATAGTTTTGGAACAGGGAGAGCCAGTGATTTGGATTTTCTTTCACCATTAACCAATTGTACTCAATTGCGCATACTTCTGTTGGATGGTAATGGATTTGGTGGCGTGATTCCAGATCTCATAGGCAATTTTTCTACCCACCTGACAACTCTTCGGATGGGGTTGAATCGAATATCTGGAATGATACCTGATGAAATTGGACAGCTAATCGGTTTAATCGACTTCGTCGTGGAAGATAATTATCTGGAGGGAACTATTCCAGATTCGATTGGAAGGCTTAAAAACCTAGGAAGACTTGTCCTGCAAGAAAACAAATTGTCTGGTAATATTCCTACAGCCATTGGCAATCTTACTGCGTTGTCTGAACTTTATCTGCACACCAATAAATTGAAAGGAAGCATTCCATTAAGCCTCAAACACTGCACACGCATGCAGTCATTTGGAGTTTCCGAAAATAACTTAAGTGGAGATATTCCTAGCCAAACATTTGGCAATCTAGAAGGTTTGATAAATCTTGACTTATCCAACAACTCTTTCACCGGTTCCATTCCTTTAGAGTTCGGAAACTTGAAGCACCTTTCCGTATTATATCTATACGAAAACAAGTTGTCTGGTGAAATTCCCATAGAACTTGGAGCTTGTTCGGCATTAACAGAGCTTGTGTTGCAGAGTAACTTCTTCCGCGGAAGCATTCCTTCGTTCTTGGGCTCTTTAGGATCCCTTGAATTCCTAGACCTTTCTAACAATAACTTCTCAAGCACAATCCCTGTTGAACTACAAAAGTTGAGTTATTTGAATGCTTTGAACTTGTCTTTTAACCATCTTTATGGTGAGGTTCCCACAGGAGGTGTCTTTAATAATGTTACAGAAATTTCACTCATTGGAAATAAGGATCTCTGTGGCGGGATACCTCAACTGAAGCTTCCTGCATGCTCTAAGTTGTCCTCAAAGAAACACAAGTGGTCTTTTAAAACGAAACTCATCCTCATCATTGCAATTGTCGTTGGAGTGGGTGTGGTTACTTCAACACTGTTTATCAGCATCTATTTGTTCAGAAAAAAGCCCATAACACCCAAAACACCATCGAGTTCATGTTCTCATAAAAACAAGTACGTGAAGGTTTCTTATGGAGATCTGCATAAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGTTCGGGAAGCTTTGGTTCTGTATATAGTGGATCTCTTCTCCCTTTCGAAACACCTATTGCTGTGAAGGTATTGAATCTTGAAATAGGTGGTGCATCAAAGAGTTTCGCAGCTGAGTGCAAGGCTCTAGGAAGGATCATGCATCGGAATCTTCTCAACATCTTGACTTGTTGTTCAAGTATCGATTATAACGGTAAAGATTTCAAGGCTATAGTTTATGACTTCATGCCTAATGGCAGTCTAGAAGGTTTGCTTCACGACAACGTAGTGCTGGAGTCTAGAAATTTCAGTGTCAACCTTGATCTTGTGGTAAATATTGCTCTTGATGTTGCCAATGCATTGGATTATCTTCATCATGGTTCTGAGGAAGCTATAGTTCACTGTGATATTAAGCCAAGCAACGTTCTTCTTGATGATGACATGGTTGCTCACTTGGGTGATTTTGGGTTAGCAAGACTCGTTCACGTGGCAACGGGACATTCCAGCAGAGATCAAGTTAGTTCCTCTGCAATTAGAGGAACCATTGGATATGTTCCACCAGAGTACGGAACAGGTTGTGGAGTATCAACTAAAGGAGATATGTACAGCTACGGAATTCTTGTGTTAGAGATGGTGACAGGGAGGAGACCAACAGATGCAATGTTTGGTGAAGGTGTAAGTCTACACAAATTCTGCCAAATGGCAATTCCAGAAGGGATCACTGAGATAGCAGATTCACGTTTGCTTGTACCAGTTGTTGAAGAAGGAAGAAGGATGATGGAAATAAAAATTAGGGAGTGTTTGGTGGGCTTAGCAAGGATTGGAGTTGAATGTTCTGCAGAATTACCTGTTGATCGAATGGACATAAAAGATGTGGTACTGGAGCTGCACTCAATCAAACAGAGGCTGTGTCACTGA 3054 0.41 MALSVVMFLLSVVLQTLVYITPDTVALVLSSESDKVALLALKKKLTNGVPNSLPSWNHSLHLCEWQGLTCSRRHKRVSVLHLKNQNWNGILGPSLGNLTFLRALILSNINMHGEIPTQIGRLKRLQLLDLSNNNLNGQIPMHLINCSKLEVINLLYNKLNGKLPSWFGLGSMTRLNKLLLGANDLVGTIPPSLGNLSSLQHITVARNHLVGSIPHVLGRLSNLKELNLGLNDLSGVVPDSLYNLSNIQIFVLGVNRLSGTFPPKMQLAFPNLRAFFVGGNEFSGTFPSSISNITGLQVFDISSNDFSGPIPHTLGSLNKLQKFNIANNSFGTGRASDLDFLSPLTNCTQLRILLLDGNGFGGVIPDLIGNFSTHLTTLRMGLNRISGMIPDEIGQLIGLIDFVVEDNYLEGTIPDSIGRLKNLGRLVLQENKLSGNIPTAIGNLTALSELYLHTNKLKGSIPLSLKHCTRMQSFGVSENNLSGDIPSQTFGNLEGLINLDLSNNSFTGSIPLEFGNLKHLSVLYLYENKLSGEIPIELGACSALTELVLQSNFFRGSIPSFLGSLGSLEFLDLSNNNFSSTIPVELQKLSYLNALNLSFNHLYGEVPTGGVFNNVTEISLIGNKDLCGGIPQLKLPACSKLSSKKHKWSFKTKLILIIAIVVGVGVVTSTLFISIYLFRKKPITPKTPSSSCSHKNKYVKVSYGDLHKATNGFSSSNLVGSGSFGSVYSGSLLPFETPIAVKVLNLEIGGASKSFAAECKALGRIMHRNLLNILTCCSSIDYNGKDFKAIVYDFMPNGSLEGLLHDNVVLESRNFSVNLDLVVNIALDVANALDYLHHGSEEAIVHCDIKPSNVLLDDDMVAHLGDFGLARLVHVATGHSSRDQVSSSAIRGTIGYVPPEYGTGCGVSTKGDMYSYGILVLEMVTGRRPTDAMFGEGVSLHKFCQMAIPEGITEIADSRLLVPVVEEGRRMMEIKIRECLVGLARIGVECSAELPVDRMDIKDVVLELHSIKQRLCH 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02315 1017 Gene3D Ribonuclease Inhibitor 169 336 IPR032675 -
Viun8g02315 1017 Pfam Protein kinase domain 715 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02315 1017 FunFam Leucine-rich repeat receptor protein kinase EMS1 167 264 - -
Viun8g02315 1017 Gene3D Transferase(Phosphotransferase) domain 1 795 1016 - -
Viun8g02315 1017 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 795 1017 - -
Viun8g02315 1017 PANTHER LEUCINE RICH REPEAT KINASE 2 344 1014 - -
Viun8g02315 1017 FunFam Leucine-rich repeat receptor-like kinase 35 143 - -
Viun8g02315 1017 SMART serkin_6 713 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02315 1017 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 794 - -
Viun8g02315 1017 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
Viun8g02315 1017 ProSiteProfiles Leucine-rich repeat profile. 567 588 IPR001611 GO:0005515
Viun8g02315 1017 SUPERFAMILY L domain-like 55 330 - -
Viun8g02315 1017 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Viun8g02315 1017 SUPERFAMILY Protein kinase-like (PK-like) 688 1008 IPR011009 -
Viun8g02315 1017 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 267 345 - -
Viun8g02315 1017 Pfam Leucine rich repeat 543 602 IPR001611 GO:0005515
Viun8g02315 1017 Pfam Leucine rich repeat 472 530 IPR001611 GO:0005515
Viun8g02315 1017 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Viun8g02315 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Viun8g02315 1017 Gene3D Ribonuclease Inhibitor 337 647 IPR032675 -
Viun8g02315 1017 Gene3D Ribonuclease Inhibitor 30 168 IPR032675 -
Viun8g02315 1017 ProSiteProfiles Protein kinase domain profile. 713 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02315 1017 SUPERFAMILY RNI-like 255 608 - -
Viun8g02315 1017 FunFam Inactive leucine-rich repeat receptor-like protein kinase 346 638 - -
Viun8g02315 1017 SMART LRR_typ_2 493 516 IPR003591 -
Viun8g02315 1017 SMART LRR_typ_2 172 196 IPR003591 -
Viun8g02315 1017 SMART LRR_typ_2 122 146 IPR003591 -
Viun8g02315 1017 SMART LRR_typ_2 444 467 IPR003591 -
Viun8g02315 1017 SMART LRR_typ_2 565 588 IPR003591 -
Viun8g02315 1017 SMART LRR_typ_2 517 541 IPR003591 -
Viun8g02315 1017 SMART LRR_typ_2 220 243 IPR003591 -
Viun8g02315 1017 Gene3D Phosphorylase Kinase; domain 1 678 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02315 Viun-Chr8 33140585 33143964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02315 29 1015 Receptor kinase-like Gene Family AT3G47570 43.863 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun8g02315 Pkinase 7.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02315 - - gmx:100777490 1515.75