Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02314 ATGTTTCTTCTCAGTGTTGTTTCACAGAGCTTAGTGTACATGATGCCACCTACAGTTGGTCTCTCTTTGAGTTCAGAGAGTGACAAGCTGGCTTTACTTGCTTTGAAGCATAAGCTTACCAATGGAGTCGCCAATGCTCTTCCATCATGGAACAACTCTCTGCATTTCTGTGAGTGGCAGGGTGTTACATGCGGACATCGCCATATGAGAGTCTCTGTCTTGCACTTGCAAAATCAAAACTGGGGTGGCACTCTTGGACCATCTTTGGGAAATCTAACCTTCCTCACAACCCTCATTCTTTCCAACATCAACTTGTATGGGGAAATTCCCGCACAAATTGGTCGATTAAAGAGGTTGCAGGTTCTTGACTTGAGCCACAACAGTCTAAATGGTCAGATTCCTGTACACCTTTCTAACTGCTCTAAACTTGAGGTCATTAACTTGTTGTACAACAAACTCAATGGAAAACTTCCCTCCTGGTTCGGACTTGGATCCATGACACGGCTTAATAAGTTGCTTCTTGGTGCCAATGATCTAGTCGGTACTGTCCCACCTTCCTTGGGAAATCTTTCATCGCTCCAAAATATCACAGTGGCAAGAAATCATTTGGTGGGAAGTATACCACATGTTTTGGGCCGATTATCAAATTTGAAGGAGCTGAATCTTGGTTTAAATAATTTGTCAGGAGTAGTGCCTGATTCTCTTTATAACCTTTCCAATATTCAAACTTTTGTTCTCGGGGTAAACCGGTTATCTGGTACTCTTCCATCAAAAATGCAACTTGCTTTTCCAAACCTTAGAGCATTCTTTGTTGGAGATAACCAGTTGAATGGAGCTTTCCCGTCTTCAATATCCAACATCACCGGATTGCAAGCGTTTGATATCTCCTTAAATGGTTTCAGTGGGCCAATTCCTCCCACTTTGGGAAGCTTAAACAAACTCGAGACGTTTAGCATTTTTGATAATAGATTTGGAAGTGGGAGCGCTCAAGATTTAGATTTCCTTTCCTCTTTAACCAATTGTACTCAATTGAAGATACTTCTTTTGGGTTGGAATGAATTTGGCGGTGTGTTGCCAGATCTTATTGGCAATTTTTCTACCAATCTCACTTCGCTCAGTATGGAGTGTAATCAAATAACTGGAATGATACCTGAAGGAATTGGACGGCTAATCGGTTTAACTAACCTCGTCCTGATTAATAATTATCTTGAGGGGAGCGTTCCAGATTCGATTGGAACGCTTAAAATTCTAGTACGATTGGCCCTGCAAAACAATAAACTGTCTGGTCATATTCCTACCGCCATTGGCAATCTTACTATGTTGTCTGAACTTTATCTGCACACCAATAAATTCGAAGGAAGCATTCCATTAAGCCTCAAACACTGCACACGCATGCAGTCATTTGGTGTTTCCACCAACAACTTGAGTGGAGATATCCCTGATCAAATATTTGGCAATCTAAAAGGTTTGATAAATCTTGACTTATCAAACAACTCTTTCACCGGTTCCATTCCTTTAGAGATTGGAAACTTGACGCACCTTTCCGTACTATATCTAAACGAAAACAAGTTGTCTGGTGAAATTCCTGCCAAACTTGCTGCTTGTTCCGCATTAACAGAACTCATGTTGCAGATAAACTTTTTCCGAGGAAGCATACCTTCGTTCTTTGGCTCTTTAGGATCCCTGGAAATCCTAGACCTTTCTAACAACAACTTCTCAAGTGTAATCCCTGCTGAACTACAAAATCTGACTTTTTTGTATACTTTGAACTTGTCTTTTAACCATCTTTATGGTGAGGTTCCTATAGGAGGAGTCTTTAATAATGTTACAGTAATTTCACTCATTGGAAATAAGGATCTCTGTGGTGGGATACCTCAATTGAACCTTCCTGCATGCTCTAAGTTGCCCTCAAAGAAACGCAAGTGGACGTGTAGAAAGAAACTCATCCTCATCATTGCAATTGAAGTTGGAGTGTATTTGGTTGCTTTGACAGTGTTTATCAGCATCTATTTGTTCAGGAAAAGGCCCAAAACACCATCGACTTCATGTTCTCCTAAAAATGAGTACGTAAAGGTTTCTTATGGAGATCTGCATAAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGGTCTGGAGGCTTTGGTTCTGTATATAATGGATATCTTCTCCCTTTCGAAACACCTGTTGCTGTGAAGGTATTGAATCTTGAAACAGTTGGGGCGTCAAAGAGCTTCGCAGCTGAGTGCAAGGCTCTAGGAAGGATCATGCATCGGAATCTTGTCAACATCTTGACTTGTTGTTCAAGCATTGATTATAACGGTAAAGATTTCAAGGCTATAGTTCTCGAGTTCATGCCTAATGGCAGTCTAGAAAAG 2379 0.4077 MFLLSVVSQSLVYMMPPTVGLSLSSESDKLALLALKHKLTNGVANALPSWNNSLHFCEWQGVTCGHRHMRVSVLHLQNQNWGGTLGPSLGNLTFLTTLILSNINLYGEIPAQIGRLKRLQVLDLSHNSLNGQIPVHLSNCSKLEVINLLYNKLNGKLPSWFGLGSMTRLNKLLLGANDLVGTVPPSLGNLSSLQNITVARNHLVGSIPHVLGRLSNLKELNLGLNNLSGVVPDSLYNLSNIQTFVLGVNRLSGTLPSKMQLAFPNLRAFFVGDNQLNGAFPSSISNITGLQAFDISLNGFSGPIPPTLGSLNKLETFSIFDNRFGSGSAQDLDFLSSLTNCTQLKILLLGWNEFGGVLPDLIGNFSTNLTSLSMECNQITGMIPEGIGRLIGLTNLVLINNYLEGSVPDSIGTLKILVRLALQNNKLSGHIPTAIGNLTMLSELYLHTNKFEGSIPLSLKHCTRMQSFGVSTNNLSGDIPDQIFGNLKGLINLDLSNNSFTGSIPLEIGNLTHLSVLYLNENKLSGEIPAKLAACSALTELMLQINFFRGSIPSFFGSLGSLEILDLSNNNFSSVIPAELQNLTFLYTLNLSFNHLYGEVPIGGVFNNVTVISLIGNKDLCGGIPQLNLPACSKLPSKKRKWTCRKKLILIIAIEVGVYLVALTVFISIYLFRKRPKTPSTSCSPKNEYVKVSYGDLHKATNGFSSSNLVGSGGFGSVYNGYLLPFETPVAVKVLNLETVGASKSFAAECKALGRIMHRNLVNILTCCSSIDYNGKDFKAIVLEFMPNGSLEK 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02314 793 SUPERFAMILY L domain-like 25 324 - -
Viun8g02314 793 SMART LRR_typ_2 414 438 IPR003591 -
Viun8g02314 793 SMART LRR_typ_2 511 535 IPR003591 -
Viun8g02314 793 SMART LRR_typ_2 583 608 IPR003591 -
Viun8g02314 793 SMART LRR_typ_2 116 140 IPR003591 -
Viun8g02314 793 SMART LRR_typ_2 214 237 IPR003591 -
Viun8g02314 793 SMART LRR_typ_2 559 582 IPR003591 -
Viun8g02314 793 PANTHER UNNAMED PRODUCT 336 775 - -
Viun8g02314 793 SUPERFAMILY Protein kinase-like (PK-like) 680 792 IPR011009 -
Viun8g02314 793 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 261 339 - -
Viun8g02314 793 Pfam Protein tyrosine and serine/threonine kinase 708 792 IPR001245 GO:0004672|GO:0006468
Viun8g02314 793 SUPERFAMILY L domain-like 366 622 - -
Viun8g02314 793 Gene3D Ribonuclease Inhibitor 331 640 IPR032675 -
Viun8g02314 793 Gene3D Phosphorylase Kinase; domain 1 668 785 - -
Viun8g02314 793 PRINTS Leucine-rich repeat signature 119 132 - -
Viun8g02314 793 PRINTS Leucine-rich repeat signature 559 572 - -
Viun8g02314 793 ProSiteProfiles Leucine-rich repeat profile. 561 582 IPR001611 GO:0005515
Viun8g02314 793 FunFam Leucine-rich repeat receptor protein kinase EMS1 163 258 - -
Viun8g02314 793 Gene3D Ribonuclease Inhibitor 25 166 IPR032675 -
Viun8g02314 793 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Viun8g02314 793 Gene3D Ribonuclease Inhibitor 167 330 IPR032675 -
Viun8g02314 793 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Viun8g02314 793 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Viun8g02314 793 Pfam Leucine rich repeat 470 524 IPR001611 GO:0005515
Viun8g02314 793 FunFam Inactive leucine-rich repeat receptor-like protein kinase 340 632 - -
Viun8g02314 793 ProSiteProfiles Protein kinase domain profile. 704 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g02314 793 FunFam Nuclear pore complex protein NUP107 25 162 - -
Viun8g02314 793 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Viun8g02314 793 FunFam LRR receptor-like serine/threonine-protein kinase EFR 675 785 - -
Viun8g02314 793 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02314 Viun-Chr8 33125330 33127725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02314 23 792 Receptor kinase-like Gene Family AT3G47570 44.530 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun8g02314 PK_Tyr_Ser-Thr 8.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02314 - - vun:114195518 1546.95