Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02305 ATGGCTTCCTCTTACCGTGACCGCACATCGGAGTTCCGGTTACTGTCGGAGACTCTGAAGAAGATCGGAGGAGGGACCTCGTCTTCGGTTCAACCCGAGACTGCTCCTTCCACCTCTCATGATTCCTATTCAAGATCCGAATTCAACCGAAAGGCCTCACGCATCGGGTTGGGGATCAATGAGACCTCACAGAAGGTGGCGAGGCTCGCGCAGCTGGCGAGGAGGTCGTCCATGTTCAACGATCCGGCCGTGGAGATTCAGGAGCTGACTGCGCTGATTAAGAACGAGATCACGGCGCTGAATTCGGCTCTCTCCGATTTGCAAGCCATTCAGAACATGGACATGGCTGATGGAAGTTACTCGCAGGATAGGATTGTGCATTCAACCGCGGTTTGTGATGACTTGAAGAGCAAACTAATGGGAGCCACGAAGCATCTTCAAGATGTCTTAACTGCTAGGACAGAGAATATCAAGGCTCACGAGAGCAGGAAGCAGATTTTTTCCAAGAATGCATCAAGGGAGAACCCTTTCCAGCATCAACCAAAGCCAGCTACTGAGCCGCCACCTTGGTTAAATTCGGTGAATGCATATGACAATCTGCAACAAGAATCGGTATTATCATCAAATGGAGCTCCTGTTAGCAATCAACTAAGACGAAGGTTGGCTGTGGACAACACTCCAACTCAGCAAATGGAAATGTCTATGGTGCAGCGGGTTATTCCTCGGCAAGAAAACTACACTCAAAGTAGGTCAACTGCTCTGCACAATGTGGAGTCTACCATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCGAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTCTAATAAAGATATTTGCCGTTCTGATACTTTTCCTCTTGATCTTCATATTCTTTGTGGCCTAA 1011 0.4777 MASSYRDRTSEFRLLSETLKKIGGGTSSSVQPETAPSTSHDSYSRSEFNRKASRIGLGINETSQKVARLAQLARRSSMFNDPAVEIQELTALIKNEITALNSALSDLQAIQNMDMADGSYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHESRKQIFSKNASRENPFQHQPKPATEPPPWLNSVNAYDNLQQESVLSSNGAPVSNQLRRRLAVDNTPTQQMEMSMVQRVIPRQENYTQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFAVLILFLLIFIFFVA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02305 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Viun8g02305 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Viun8g02305 336 PANTHER SYNTAXIN 46 331 IPR045242 -
Viun8g02305 336 CDD SNARE_syntaxin5 248 323 - -
Viun8g02305 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Viun8g02305 336 MobiDBLite consensus disorder prediction 22 43 - -
Viun8g02305 336 SMART tSNARE_6 239 306 IPR000727 -
Viun8g02305 336 MobiDBLite consensus disorder prediction 160 189 - -
Viun8g02305 336 Pfam SNARE domain 281 332 IPR000727 -
Viun8g02305 336 Gene3D - 41 299 - -
Viun8g02305 336 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02305 Viun-Chr8 33035616 33041812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02305 1 336 SNARE and Associated Proteins AT5G05760 64.985 1.55e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02305 K08490 - gmx:100777383 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02305 8 33035616 33041812 Viun8g02305 8 33035616 33041812 ECH