Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02292 ATGCCTTCTTCTGCTTCTCTTTCTGCACCTACCTTGCTCTCCAAATGCACTGTCTTCCCGGACCAAACCTCAACTATGGCAAATCTCAAACTCTCCGTTTCGGACCTTCCCATGTTGTCCTGCCACTACATCCAAAAGGGATGTCTCTTTACCCAACCCAATATCCCATCCCACACTCTAATTCCTCTTCTTAAATCCGCACTCTCTCGCACACTCTCTCTCTTTCCACCTCTAGCTGGCCGTTTAACCACCGATTCCAACGGCTACGTTTACATCGCTTGCAACGACGCCGGCGTCGATTTCATACACGCCAATGCCGCCGCCTTCCGCGTCTGCGACCTCCTGTCCCCACTCGACGTCCCCGAATGCTTCAAGGAGTTTTTCACCTTCGACAGGAAAGTCAGCTACACCGGCCATTACTCCCCGATTCTCGCCGTTCAGGTCACCGAACTCGCTGACGGCCTCTTCATCGGCTGCGCCGTCAATCACGCCGTCACCGACGGCACCTCCTTCTGGAACTTCTTCAACACCTTCGCCCACCTCTGCAGAGCATCGAATAAAAGCTTCCGCAATATACCGGACTTCAGCCGCGAATCCGCTCTGATCTCTGACGCCGTCCTCCGCCTACCGGAGGGCGGCCCCCAGGTCACGTTCGATTCTCACGCGCCGCTGCGCGAGAGAATCTTCAGCTTCAGCCGCGAGGCGATTCAGAAGCTGAAGGCAATGACGAACAACCGCCGATGGCCGGAGAACAACGGGACCGCCGTGGAGTTGATGCGGAAGCAAAGCAACGATCAGTTTCATCACGCGAAGGAGAGCAACGGCAAGGCCGGTACAATTCTGGAGAACTGGTTCAAGGTGAACTCGAATTCGAAACCGCAGACGGTTACCGAAACGGTGGAGATTTCGTCGTTTCAATCGGTGTGCGCGTTGCTGTGGCGCGCGGTTACGCGCGCGAGGAAATTGCCTGCGTCGAAAACGACGACGTTCAGAATGGCAGTTAACTGTCGTCATCGAATAGAACCAAAATTGGAACCGTACTACTTCGGGAACGCGATTCAGAGCGTGCCAACGTATGCTTCTGCTGGCGACGTGTTATCGAGGGATCTACGGTGGTGCGCGGAGCAGCTGAACGCAAACGTGAAGGCGCACGACGACGCTATGGTGCGGCGCTTCATAGACGATTGGGAGCAGAAACCCCGGTGCTTCCCTCTCGGGAACCCCGACGGTGCATCCATCACTATGGGTAGTTCTCCGAGGTTTCCAATGTACGATAACAATTTCGGGTGGGGGAGACCCCTGGCGGTGAGAAGTGGAAGAGCGAACAAATTCGACGGTAAGATCTCGGCGTTTCCCGGAAGAGACGGAACCGGGACCGTCGATTTGGAAGTGGTTTTAGCGCCCGAAACCATGGAGGCGCTGGAATCTGATCCAGAATTCACGAAATATGCAACGTGTCAGTTGTGA 1467 0.5528 MPSSASLSAPTLLSKCTVFPDQTSTMANLKLSVSDLPMLSCHYIQKGCLFTQPNIPSHTLIPLLKSALSRTLSLFPPLAGRLTTDSNGYVYIACNDAGVDFIHANAAAFRVCDLLSPLDVPECFKEFFTFDRKVSYTGHYSPILAVQVTELADGLFIGCAVNHAVTDGTSFWNFFNTFAHLCRASNKSFRNIPDFSRESALISDAVLRLPEGGPQVTFDSHAPLRERIFSFSREAIQKLKAMTNNRRWPENNGTAVELMRKQSNDQFHHAKESNGKAGTILENWFKVNSNSKPQTVTETVEISSFQSVCALLWRAVTRARKLPASKTTTFRMAVNCRHRIEPKLEPYYFGNAIQSVPTYASAGDVLSRDLRWCAEQLNANVKAHDDAMVRRFIDDWEQKPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGRANKFDGKISAFPGRDGTGTVDLEVVLAPETMEALESDPEFTKYATCQL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02292 488 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 13 480 - -
Viun8g02292 488 Pfam Transferase family 12 480 - -
Viun8g02292 488 Gene3D - 223 479 IPR023213 -
Viun8g02292 488 SUPERFAMILY CoA-dependent acyltransferases 39 184 - -
Viun8g02292 488 Gene3D - 11 207 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02292 Viun-Chr8 32961941 32963773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02292 18 475 Monolignol Biosynthesis Gene Families AT5G48930 27.292 2.73e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02292 - - gmx:100500612 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02292 8 32961941 32963773 Viun8g02292 8 32961941 32963773 ECH
Viun1g03180 1 39805937 39807808 Viun8g02292 8 32961941 32963773 PCT